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Differential equations

Reduction Theories Elucidate the Origins of Complex Biological Rhythms Generated by Interacting Delay-Induced Oscillations

Ikuhiro Yamaguchi, Yutaro Ogawa, [ ... ], Kiyoshi Kotani

The Role of Regulated mRNA Stability in Establishing Bicoid Morphogen Gradient in Drosophila Embryonic Development

Wei Liu, Mahesan Niranjan

Graphical Approach to Model Reduction for Nonlinear Biochemical Networks

David O. Holland, Nicholas C. Krainak, Jeffrey J. Saucerman

ENZO: A Web Tool for Derivation and Evaluation of Kinetic Models of Enzyme Catalyzed Reactions

Staš Bevc, Janez Konc, [ ... ], Dušanka Janežič

A Unique Transformation from Ordinary Differential Equations to Reaction Networks

Sylvain Soliman, Monika Heiner

Feller Processes: The Next Generation in Modeling. Brownian Motion, Lévy Processes and Beyond

Björn Böttcher

DREAM4: Combining Genetic and Dynamic Information to Identify Biological Networks and Dynamical Models

Alex Greenfield, Aviv Madar, Harry Ostrer, Richard Bonneau

A Minimal Model of Signaling Network Elucidates Cell-to-Cell Stochastic Variability in Apoptosis

Subhadip Raychaudhuri

Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data

Kevin Y. Yip, Roger P. Alexander, Koon-Kiu Yan, Mark Gerstein

Structural Analysis to Determine the Core of Hypoxia Response Network

Monika Heiner, K. Sriram

A Many-Body Field Theory Approach to Stochastic Models in Population Biology

Peter J. Dodd, Neil M. Ferguson

Coupled Contagion Dynamics of Fear and Disease: Mathematical and Computational Explorations

Joshua M. Epstein, Jon Parker, Derek Cummings, Ross A. Hammond

Dynamical Systems Analysis of Mitochondrial BAK Activation Kinetics Predicts Resistance to BH3 Domains

Claire Grills, Nyree Crawford, [ ... ], Dean A. Fennell

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