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Computational techniques

Structural Position Correlation Analysis (SPCA) for Protein Family

Qi-Shi Du, Jian-Zong Meng, [ ... ], Ri-Bo Huang

Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words

Hsin-Nan Lin, Cédric Notredame, [ ... ], Wen-Lian Hsu

On the Evolutionary Origin of Eukaryotic DNA Methyltransferases and Dnmt2

Tomasz P. Jurkowski, Albert Jeltsch

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

Sequence-Based Classification Using Discriminatory Motif Feature Selection

Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal

Phylogenetic and Complementation Analysis of a Single-Stranded DNA Binding Protein Family from Lactococcal Phages Indicates a Non-Bacterial Origin

Agnieszka K. Szczepankowska, Eric Prestel, [ ... ], Elena Bidnenko

Multichannel Detrended Fluctuation Analysis Reveals Synchronized Patterns of Spontaneous Spinal Activity in Anesthetized Cats

Erika E. Rodríguez, Enrique Hernández-Lemus, [ ... ], Pablo Rudomín

An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, [ ... ], Agostinho Antunes

The Nature and Perception of Fluctuations in Human Musical Rhythms

Holger Hennig, Ragnar Fleischmann, [ ... ], Theo Geisel

Adaptive Evolution of Cooperation through Darwinian Dynamics in Public Goods Games

Kuiying Deng, Tianguang Chu

Resources and Costs for Microbial Sequence Analysis Evaluated Using Virtual Machines and Cloud Computing

Samuel V. Angiuoli, James R. White, [ ... ], W. Florian Fricke

Identification of a Conserved Anti-Apoptotic Protein That Modulates the Mitochondrial Apoptosis Pathway

Yu Zhang, Elisabet Johansson, [ ... ], Marshall W. Anderson

An α/β Hydrolase and Associated Per-ARNT-Sim Domain Comprise a Bipartite Sensing Module Coupled with Diverse Output Domains

Eugene V. Nadezhdin, Margaret S. Brody, Chester W. Price

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