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ChIA PET

Predicting chromatin conformation contact maps

Alan Min, Jacob Schreiber, Anshul Kundaje, William S. Noble

An in silico procedure for generating protein-mediated chromatin interaction data and comparison of significant interaction calling methods

Shuyuan Lou, Shili Lin

PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence

Caitlin Mills, Anushya Muruganujan, [ ... ], Huaiyu Mi

Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq

Yong Chen, Yunfei Wang, [ ... ], Michael Q. Zhang

The Distinct Gene Regulatory Network of Myoglobin in Prostate and Breast Cancer

Anne Bicker, Alexandra M. Brahmer, [ ... ], Thomas Hankeln

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

Nicolas Buisine, Xiaoan Ruan, [ ... ], Laurent M. Sachs

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing

Isaac Kremsky, Nicolás Bellora, Eduardo Eyras

High Resolution Mapping of Enhancer-Promoter Interactions

Christopher Reeder, Michael Closser, [ ... ], David Gifford

Statistical Models for Detecting Differential Chromatin Interactions Mediated by a Protein

Liang Niu, Guoliang Li, Shili Lin

Characterization of Genomic Vitamin D Receptor Binding Sites through Chromatin Looping and Opening

Sabine Seuter, Antonio Neme, Carsten Carlberg

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