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BLAST algorithm

An Efficient Approach for the Development of Locus Specific Primers in Bread Wheat (Triticum aestivum L.) and Its Application to Re-Sequencing of Genes Involved in Frost Tolerance

Steve Babben, Dragan Perovic, Michael Koch, Frank Ordon

published 13 Nov 2015

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COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets

Tungadri Bose, Mohammed Monzoorul Haque, CVSK Reddy, Sharmila S. Mande

published 11 Nov 2015

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PATBox: A Toolbox for Classification and Analysis of P-Type ATPases

Dan Søndergaard, Christian Nørgaard Storm Pedersen

published 30 Sep 2015

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Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome

Andrey Ptitsyn, Ramzi Temanni, Christelle Bouchard, Peter A. V. Anderson

published 22 Sep 2015

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Identification and Characterization of a Novel Galactofuranose-Specific β-D-Galactofuranosidase from Streptomyces Species

Emiko Matsunaga, Yujiro Higuchi, Kazuki Mori, Nao Yairo, Takuji Oka, Saki Shinozuka, Kosuke Tashiro, Minoru Izumi, Satoru Kuhara, Kaoru Takegawa

published 04 Sep 2015

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Diversity of Marine-Derived Fungal Cultures Exposed by DNA Barcodes: The Algorithm Matters

Nikos Andreakis, Lone Høj, Philip Kearns, Michael R. Hall, Gavin Ericson, Rose E. Cobb, Benjamin R. Gordon, Elizabeth Evans-Illidge

published 26 Aug 2015

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Cyanobacterial KnowledgeBase (CKB), a Compendium of Cyanobacterial Genomes and Proteomes

Arul Prakasam Peter, Karthick Lakshmanan, Shylajanaciyar Mohandass, Sangeetha Varadharaj, Sivasudha Thilagar, Kaleel Ahamed Abdul Kareem, Prabaharan Dharmar, Subramanian Gopalakrishnan, Uma Lakshmanan

published 25 Aug 2015

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An Efficient Minimum Free Energy Structure-Based Search Method for Riboswitch Identification Based on Inverse RNA Folding

Matan Drory Retwitzer, Ilona Kifer, Supratim Sengupta, Zohar Yakhini, Danny Barash

published 31 Jul 2015

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Search Engine for Antimicrobial Resistance: A Cloud Compatible Pipeline and Web Interface for Rapidly Detecting Antimicrobial Resistance Genes Directly from Sequence Data

Will Rowe, Kate S. Baker, David Verner-Jeffreys, Craig Baker-Austin, Jim J. Ryan, Duncan Maskell, Gareth Pearce

published 21 Jul 2015

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SNBRFinder: A Sequence-Based Hybrid Algorithm for Enhanced Prediction of Nucleic Acid-Binding Residues

Xiaoxia Yang, Jia Wang, Jun Sun, Rong Liu

published 15 Jul 2015

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Molecular Identification of Atlantic Bluefin Tuna (Thunnus thynnus, Scombridae) Larvae and Development of a DNA Character-Based Identification Key for Mediterranean Scombrids

Gregory Neils Puncher, Haritz Arrizabalaga, Francisco Alemany, Alessia Cariani, Isik K. Oray, F. Saadet Karakulak, Gualtiero Basilone, Angela Cuttitta, Salvatore Mazzola, Fausto Tinti

published 06 Jul 2015

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Application of DNA Barcodes in Asian Tropical Trees – A Case Study from Xishuangbanna Nature Reserve, Southwest China

Xiao-cui Huang, Xiu-qin Ci, John G. Conran, Jie Li

published 29 Jun 2015

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Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data

Gordon M. Daly, Richard M. Leggett, William Rowe, Samuel Stubbs, Maxim Wilkinson, Ricardo H. Ramirez-Gonzalez, Mario Caccamo, William Bernal, Jonathan L. Heeney

published 22 Jun 2015

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