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Biological databases

Identification of fungi in shotgun metagenomics datasets

Paul D. Donovan, Gabriel Gonzalez, [ ... ], Kimihito Ito

The Choice of PCR Primers Has Great Impact on Assessments of Bacterial Community Diversity and Dynamics in a Wastewater Treatment Plant

Nils Johan Fredriksson, Malte Hermansson, Britt-Marie Wilén

Abundant Human DNA Contamination Identified in Non-Primate Genome Databases

Mark S. Longo, Michael J. O'Neill, Rachel J. O'Neill

Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

Swee Hoe Ong, Vinutha Uppoor Kukkillaya, [ ... ], Niranjan Nagarajan

Prediction of Metal Ion–Binding Sites in Proteins Using the Fragment Transformation Method

Chih-Hao Lu, Yu-Feng Lin, Jau-Ji Lin, Chin-Sheng Yu

Environmental DNA (eDNA) metabarcoding assays to detect invasive invertebrate species in the Great Lakes

Katy E. Klymus, Nathaniel T. Marshall, Carol A. Stepien

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, [ ... ], Todd Z. DeSantis

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

Jason S. Cumbie, Jeffrey A. Kimbrel, [ ... ], Jeff H. Chang

Evaluating the Accuracy of Morphological Identification of Larval Fishes by Applying DNA Barcoding

Hui-Ling Ko, Yu-Tze Wang, [ ... ], Kwang-Tsao Shao

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

The Role of Balanced Training and Testing Data Sets for Binary Classifiers in Bioinformatics

Qiong Wei, Roland L. Dunbrack Jr

RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design

Po-Ssu Huang, Yih-En Andrew Ban, [ ... ], David Baker

The Hemolymph Proteome of Fed and Starved Drosophila Larvae

Björn Handke, Ingrid Poernbacher, [ ... ], Christian F. Lehner

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