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Biological databases

Comparing serum protein levels can aid in differentiating HPV-negative and -positive oropharyngeal squamous cell carcinoma patients

Amy Dickinson, Mayank Saraswat, Stina Syrjänen, Tiialotta Tohmola, Robert Silén, Reija Randén-Brady, Timo Carpén, Jaana Hagström, Caj Haglund, Petri Mattila, Antti Mäkitie, Sakari Joenväärä, Suvi Silén

published 15 Jun 2020

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Bayesian networks established functional differences between breast cancer subtypes

Lucía Trilla-Fuertes, Angelo Gámez-Pozo, Jorge M. Arevalillo, Rocío López-Vacas, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, María Ferrer-Gómez, Hilario Navarro, Paolo Nanni, Pilar Zamora, Enrique Espinosa, Paloma Maín, Juan Ángel Fresno Vara

published 11 Jun 2020

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Human exome and mouse embryonic expression data implicate ZFHX3, TRPS1, and CHD7 in human esophageal atresia

Rong Zhang, Jan Gehlen, Amit Kawalia, Maria-Theodora Melissari, Tikam Chand Dakal, Athira M. Menon, Julia Höfele, Korbinian Riedhammer, Lea Waffenschmidt, Julia Fabian, Katinka Breuer, Jeshurun Kalanithy, Alina Christine Hilger, Amit Sharma, Alice Hölscher, Thomas M. Boemers, Markus Pauly, Andreas Leutner, Jörg Fuchs, Guido Seitz, Barbara M. Ludwikowski, Barbara Gomez, Jochen Hubertus, Andreas Heydweiller, Ralf Kurz, Johannes Leonhardt, Ferdinand Kosch, Stefan Holland-Cunz, Oliver Münsterer, Beno Ure, Eberhard Schmiedeke, Jörg Neser, Petra Degenhardt, Stefanie Märzheuser, Katharina Kleine, Mattias Schäfer, Nicole Spychalski, Oliver J. Deffaa, Jan-Hendrik Gosemann, Martin Lacher, Stefanie Heilmann-Heimbach, Nadine Zwink, Ekkehart Jenetzky, Michael Ludwig, Phillip Grote, Johannes Schumacher, Holger Thiele, Heiko Reutter

published 05 Jun 2020

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Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor

Melissa F. Adasme, Daniele Parisi, Kristien Van Belle, Sebastian Salentin, V. Joachim Haupt, Gary S. Jennings, Jörg-Christian Heinrich, Jean Herman, Ben Sprangers, Thierry Louat, Yves Moreau, Michael Schroeder

published 27 May 2020

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Sharpening the DNA barcoding tool through a posteriori taxonomic validation: The case of Longitarsus flea beetles (Coleoptera: Chrysomelidae)

Daniele Salvi, Emanuele Berrilli, Paola D’Alessandro, Maurizio Biondi

published 21 May 2020

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High polymerase ε expression associated with increased CD8+T cells improves survival in patients with non-small cell lung cancer

Kyueng-Whan Min, Wan-Seop Kim, Dong-Hoon Kim, Byoung Kwan Son, Young Ha Oh, Mi Jung Kwon, Hye Seung Lee, Seung Eun Lee, In Ae Kim, Ji-Yong Moon, Kyoung-Yeon Kim, Jung-Hoon Park

published 20 May 2020

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High prevalence of phenotypic pyrazinamide resistance and its association with pncA gene mutations in Mycobacterium tuberculosis isolates from Uganda

Resty Naluyange, Gerald Mboowa, Kevin Komakech, Derrick Semugenze, David Patrick Kateete, Willy Ssengooba

published 15 May 2020

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Myotonia congenita and periodic hypokalemia paralysis in a consanguineous marriage pedigree: Coexistence of a novel CLCN1 mutation and an SCN4A mutation

Chenyu Zhao, DongFang Tang, Hui Huang, Haiyan Tang, Yuan Yang, Min Yang, Yingying Luo, Huai Tao, Jianguang Tang, Xi Zhou, Xiaoliu Shi

published 14 May 2020

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Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, Hye Ryoun Kim, Tae-Hyoung Kim, Sung-min Ha, Mi-Kyung Lee

published 13 May 2020

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Multifaceted analysis of training and testing convolutional neural networks for protein secondary structure prediction

Maxim Shapovalov, Roland L. Dunbrack Jr., Slobodan Vucetic

published 06 May 2020

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Weirdo19ES is a novel singleton mycobacteriophage that selects for glycolipid deficient phage-resistant M. smegmatis mutants

Cristian Alejandro Suarez, Jorgelina Judith Franceschelli, Sabrina Emilse Tasselli, Héctor Ricardo Morbidoni

published 01 May 2020

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Genetic variability of human adenovirus type 7 circulating in mainland China

Ru Cai, Naiying Mao, Jingjing Dai, Xingyu Xiang, Jing Xu, Yingwei Ma, Zhong Li, Guangyue Han, Deshan Yu, Jie Yin, Aili Cui, Yan Zhang, Hong Li, Pengbo Yu, Luyuan Guan, Yuling Tian, Liwei Sun, Yan Li, Yamei Wei, Zhen Zhu, Wenbo Xu

published 30 Apr 2020

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QUATgo: Protein quaternary structural attributes predicted by two-stage machine learning approaches with heterogeneous feature encoding

Chi-Hua Tung, Ching-Hsuan Chien, Chi-Wei Chen, Lan-Ying Huang, Yu-Nan Liu, Yen-Wei Chu

published 29 Apr 2020

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