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Biological databases

MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants

Kirsley Chennen, Thomas Weber, Xavière Lornage, Arnaud Kress, Johann Böhm, Julie Thompson, Jocelyn Laporte, Olivier Poch

published 31 Jul 2020

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The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens

Duc-Thanh Le, Yu-Qu Zhang, Yong Xu, Li-Xiu Guo, Zhi-Ping Ruan, Kevin S. Burgess, Xue-Jun Ge

published 31 Jul 2020

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Side chain flexibility and the symmetry of protein homodimers

Yaffa Shalit, Inbal Tuvi-Arad

published 24 Jul 2020

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Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing

Phillip R. Myer, Tara G. McDaneld, Larry A. Kuehn, Keith D. Dedonder, Michael D. Apley, Sarah F. Capik, Brian V. Lubbers, Gregory P. Harhay, Dayna M. Harhay, John W. Keele, Madison T. Henniger, Brooke A. Clemmons, Timothy P. L. Smith

published 13 Jul 2020

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Methylglyoxal and D-lactate in cisplatin-induced acute kidney injury: Investigation of the potential mechanism via fluorogenic derivatization liquid chromatography-tandem mass spectrometry (FD-LC-MS/MS) proteomic analysis

Shih-Ming Chen, Tsung-Hui Chen, Hui-Ting Chang, Tzu-Yao Lin, Chia-Yu Lin, Pei-Yun Tsai, Kazuhiro Imai, Chien-Ming Chen, Jen-Ai Lee

published 10 Jul 2020

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Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

Sarah J. Vancuren, Scott J. Dos Santos, Janet E. Hill, the Maternal Microbiome Legacy Project Team

published 09 Jul 2020

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Kinome capture sequencing of high-grade serous ovarian carcinoma reveals novel mutations in the JAK3 gene

Lorenza Mittempergher, Anna M. Piskorz, Astrid J. Bosma, Magali Michaut, G. Bea A. Wisman, Roelof J. C. Kluin, Marja Nieuwland, Wim Brugman, Kevin J. W. van der Ven, Francesco Marass, James Morris, Nitzan Rosenfeld, Mercedes Jimenez-Linan, Steven de Jong, Ate G. J. van der Zee, James D. Brenton, René Bernards

published 08 Jul 2020

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Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications

George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier

published 08 Jul 2020

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ShAn: An easy-to-use tool for interactive and integrated variant annotation

Venkat Subramaniam Rathinakannan, Hannu-Pekka Schukov, Samuel Heron, Johanna Schleutker, Csilla Sipeky

published 07 Jul 2020

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A simple strategy to enhance the speed of protein secondary structure prediction without sacrificing accuracy

Sheng-Hung Juan, Teng-Ruei Chen, Wei-Cheng Lo

published 30 Jun 2020

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The genome, transcriptome, and proteome of the fish parasite Pomphorhynchus laevis (Acanthocephala)

Katharina Mauer, Sören Lukas Hellmann, Marco Groth, Andreas C. Fröbius, Hans Zischler, Thomas Hankeln, Holger Herlyn

published 23 Jun 2020

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Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer

Darshan Shimoga Chandrashekar, Rachel M. Golonka, Beng San Yeoh, David J. Gonzalez, Mathias Heikenwälder, Andrew T. Gerwirtz, Sooryanarayana Varambally, Matam Vijay-Kumar

published 19 Jun 2020

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Laser capture microdissection in combination with mass spectrometry: Approach to characterization of tissue-specific proteomes of Eudiplozoon nipponicum (Monogenea, Polyopisthocotylea)

Pavel Roudnický, David Potěšil, Zbyněk Zdráhal, Milan Gelnar, Martin Kašný

published 17 Jun 2020

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