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Biological databases

dagLogo: An R/Bioconductor package for identifying and visualizing differential amino acid group usage in proteomics data

Jianhong Ou, Haibo Liu, Niraj K. Nirala, Alexey Stukalov, Usha Acharya, Michael R. Green, Lihua Julie Zhu

published 06 Nov 2020

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Algorithmic assessment of missense mutation severity in the Von-Hippel Lindau protein

Francisco R. Fields, Niraja Suresh, Morgan Hiller, Stefan D. Freed, Kasturi Haldar, Shaun W. Lee

published 05 Nov 2020

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Comparative proteomic analysis of silica-induced pulmonary fibrosis in rats based on tandem mass tag (TMT) quantitation technology

Cunxiang Bo, Xiao Geng, Juan Zhang, Linlin Sai, Yu Zhang, Gongchang Yu, Zhenling Zhang, Kai Liu, Zhongjun Du, Cheng Peng, Qiang Jia, Hua Shao

published 29 Oct 2020

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Prometheus, an omics portal for interkingdom comparative genomic analyses

Gunhwan Ko, Insu Jang, Namjin Koo, Seong-Jin Park, Sang-Ho Oh, Min-Seo Kim, Jin-Hyuk Choi, Hyeongmin Kim, Young Mi Sim, Iksu Byeon, Pan-Gyu Kim, Kye Young Kim, Jong-Cheol Yoon, Kyung-Lok Mun, Banghyuk Lee, Gukhee Han, Yong-Min Kim

published 28 Oct 2020

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ZnO and TiO₂ nanoparticles alter the ability of Bacillus subtilis to fight against a stress

Elise Eymard-Vernain, Sylvie Luche, Thierry Rabilloud, Cécile Lelong

published 12 Oct 2020

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Big Data in metagenomics: Apache Spark vs MPI

José M. Abuín, Nuno Lopes, Luís Ferreira, Tomás F. Pena, Bertil Schmidt

published 06 Oct 2020

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Identification of the significant pathways of Banxia Houpu decoction in the treatment of depression based on network pharmacology

Zi-ying Chen, Dan-feng Xie, Zhi-yuan Liu, Yong-qi Zhong, Jing-yan Zeng, Zheng Chen, Xin-lin Chen

published 30 Sep 2020

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Signatures of somatic mutations and gene expression from p16^INK4A positive head and neck squamous cell carcinomas (HNSCC)

Nabil F. Saba, Ashok R. Dinasarapu, Kelly R. Magliocca, Bhakti Dwivedi, Sandra Seby, Zhaohui S. Qin, Mihir Patel, Christopher C. Griffith, Xu Wang, Mark El-Deiry, Conor Ernst Steuer, Jeanne Kowalski, Dong Moon Shin, Michael E. Zwick, Zhuo Georgia Chen

published 28 Sep 2020

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Single-molecule real-time sequencing of the full-length transcriptome of loquat under low-temperature stress

Cuiping Pan, Yongqing Wang, Lian Tao, Hui Zhang, Qunxian Deng, Zhiwu Yang, Zhuoheng Chi, Yunmiao Yang

published 11 Sep 2020

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Association between tumor mutation profile and clinical outcomes among Hispanic Latina women with triple-negative breast cancer

Alexander Philipovskiy, Alok K. Dwivedi, Roberto Gamez, Richard McCallum, Debabrata Mukherjee, Zeina Nahleh, Renato J. Aguilera, Sumit Gaur

published 04 Sep 2020

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New label-free methods for protein relative quantification applied to the investigation of an animal model of Huntington Disease

Flora Cozzolino, Alfredo Landolfi, Ilaria Iacobucci, Vittoria Monaco, Marianna Caterino, Simona Celentano, Chiara Zuccato, Elena Cattaneo, Maria Monti

published 04 Sep 2020

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Variable patterns of mutation density among Na_V1.1, Na_V1.2 and Na_V1.6 point to channel-specific functional differences associated with childhood epilepsy

Alejandra C. Encinas, Joseph C. Watkins, Iris Arenas Longoria, J. P. Johnson Jr, Michael F. Hammer

published 26 Aug 2020

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The position of nonsense mutations can predict the phenotype severity: A survey on the DMD gene

Annalaura Torella, Mariateresa Zanobio, Roberta Zeuli, Francesca del Vecchio Blanco, Marco Savarese, Teresa Giugliano, Arcomaria Garofalo, Giulio Piluso, Luisa Politano, Vincenzo Nigro

published 19 Aug 2020

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