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Biological databases

smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, Emre Karakoc, Peter J. Unrau, Iman Hajirasouliha, S. Cenk Sahinalp

published 05 May 2009

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An Estimate of the Numbers and Density of Low-Energy Structures (or Decoys) in the Conformational Landscape of Proteins

Kanagasabai Vadivel, Gautham Namasivayam

published 09 Apr 2009

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dndDB: A Database Focused on Phosphorothioation of the DNA Backbone

Hong-Yu Ou, Xinyi He, Yucheng Shao, Cui Tai, Kumar Rajakumar, Zixin Deng

published 09 Apr 2009

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A Database of Domain Definitions for Proteins with Complex Interdomain Geometry

Indraneel Majumdar, Lisa N. Kinch, Nick V. Grishin

published 08 Apr 2009

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High-Throughput Proteomics Detection of Novel Splice Isoforms in Human Platelets

Karen A. Power, James P. McRedmond, Andreas de Stefani, William M. Gallagher, Peadar Ó Gaora

published 24 Mar 2009

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Three New Structures of Left-Handed RadA Helical Filaments: Structural Flexibility of N-Terminal Domain Is Critical for Recombinase Activity

Yu-Wei Chang, Tzu-Ping Ko, Chien-Der Lee, Yuan-Chih Chang, Kuei-Ann Lin, Chia-Seng Chang, Andrew H.-J. Wang, Ting-Fang Wang

published 19 Mar 2009

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Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

Diane E. Bennett, Ricardo J. Camacho, Dan Otelea, Daniel R. Kuritzkes, Hervé Fleury, Mark Kiuchi, Walid Heneine, Rami Kantor, Michael R. Jordan, Jonathan M. Schapiro, Anne-Mieke Vandamme, Paul Sandstrom, Charles A. B. Boucher, David van de Vijver, Soo-Yon Rhee, Tommy F. Liu, Deenan Pillay, Robert W. Shafer

published 06 Mar 2009

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Structural Model of the Rev Regulatory Protein from Equine Infectious Anemia Virus

Yungok Ihm, Wendy O. Sparks, Jae-Hyung Lee, Haibo Cao, Susan Carpenter, Cai-Zhuang Wang, Kai-Ming Ho, Drena Dobbs

published 12 Jan 2009

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Variations in the Electrostatic Landscape of Class II Human Leukocyte Antigen Molecule Induced by Modifications in the Myelin Basic Protein Peptide: A Theoretical Approach

William A. Agudelo, Johan F. Galindo, Marysol Ortiz, José L. Villaveces, Edgar E. Daza, Manuel E. Patarroyo

published 09 Jan 2009

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3640 Unique EST Clusters from the Medaka Testis and Their Potential Use for Identifying Conserved Testicular Gene Expression in Fish and Mammals

Lijan Lo, Zhenhai Zhang, Ni Hong, Jinrong Peng, Yunhan Hong

published 23 Dec 2008

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Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Epidemiology of Doublet/Multiplet Mutations in Lung Cancers: Evidence that a Subset Arises by Chronocoordinate Events

Zhenbin Chen, Jinong Feng, Carolyn H. Buzin, Steve S. Sommer

published 13 Nov 2008

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FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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