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Biological databases

Transitions at CpG Dinucleotides, Geographic Clustering of TP53 Mutations and Food Availability Patterns in Colorectal Cancer

Fabio Verginelli, Faraz Bishehsari, Francesco Napolitano, Mahboobeh Mahdavinia, Alessandro Cama, Reza Malekzadeh, Gennaro Miele, Giancarlo Raiconi, Roberto Tagliaferri, Renato Mariani-Costantini

published 31 Aug 2009

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Maximum Entropy Reconstructions of Dynamic Signaling Networks from Quantitative Proteomics Data

Jason W. Locasale, Alejandro Wolf-Yadlin

published 26 Aug 2009

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Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

Marcus J. Claesson, Orla O'Sullivan, Qiong Wang, Janne Nikkilä, Julian R. Marchesi, Hauke Smidt, Willem M. de Vos, R. Paul Ross, Paul W. O'Toole

published 20 Aug 2009

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Coupling between Properties of the Protein Shape and the Rate of Protein Folding

Dmitry N. Ivankov, Natalya S. Bogatyreva, Michail Yu Lobanov, Oxana V. Galzitskaya

published 03 Aug 2009

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Mining Biological Pathways Using WikiPathways Web Services

Thomas Kelder, Alexander R. Pico, Kristina Hanspers, Martijn P. van Iersel, Chris Evelo, Bruce R. Conklin

published 30 Jul 2009

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A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

Linda A. Amaral-Zettler, Elizabeth A. McCliment, Hugh W. Ducklow, Susan M. Huse

published 27 Jul 2009

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Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis

Peter Bakke, Nick Carney, Will DeLoache, Mary Gearing, Kjeld Ingvorsen, Matt Lotz, Jay McNair, Pallavi Penumetcha, Samantha Simpson, Laura Voss, Max Win, Laurie J. Heyer, A. Malcolm Campbell

published 20 Jul 2009

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Physical Properties of Intact Proteins May Predict Allergenicity or Lack Thereof

Suchita Singh, Bhupesh Taneja, Sundeep Santosh Salvi, Anurag Agrawal

published 17 Jul 2009

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A Novel Human Tectonin Protein with Multivalent β-Propeller Folds Interacts with Ficolin and Binds Bacterial LPS

Diana Hooi Ping Low, Zhiwei Ang, Quan Yuan, Vladimir Frecer, Bow Ho, Jianzhu Chen, Jeak Ling Ding

published 16 Jul 2009

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PSPP: A Protein Structure Prediction Pipeline for Computing Clusters

Michael S. Lee, Rajkumar Bondugula, Valmik Desai, Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman

published 16 Jul 2009

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Genomes2Drugs: Identifies Target Proteins and Lead Drugs from Proteome Data

David Toomey, Heinrich C. Hoppe, Marian P. Brennan, Kevin B. Nolan, Anthony J. Chubb

published 10 Jul 2009

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A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, Shashidhar Rao, Yogesh Hooda, Suyog Pol

published 27 May 2009

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How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

Tobias Kind, Martin Scholz, Oliver Fiehn

published 05 May 2009

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