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Biological databases

Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, Fa-Yun Che, Edward Nieves, Dmitry Rykunov, Ruth Hogue Angeletti, Louis M. Weiss, Kami Kim, Andras Fiser

published 09 Dec 2008

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Epidemiology of Doublet/Multiplet Mutations in Lung Cancers: Evidence that a Subset Arises by Chronocoordinate Events

Zhenbin Chen, Jinong Feng, Carolyn H. Buzin, Steve S. Sommer

published 13 Nov 2008

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FastBLAST: Homology Relationships for Millions of Proteins

Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin

published 31 Oct 2008

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Cataloging Coding Sequence Variations in Human Genome Databases

Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim

published 30 Oct 2008

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MiR-433 and miR-127 Arise from Independent Overlapping Primary Transcripts Encoded by the miR-433-127 Locus

Guisheng Song, Li Wang

published 30 Oct 2008

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An Analysis of Human MicroRNA and Disease Associations

Ming Lu, Qipeng Zhang, Min Deng, Jing Miao, Yanhong Guo, Wei Gao, Qinghua Cui

published 15 Oct 2008

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Genome Wide Identification of Recessive Cancer Genes by Combinatorial Mutation Analysis

Stefano Volinia, Nicoletta Mascellani, Jlenia Marchesini, Angelo Veronese, Elizabeth Ormondroyd, Hansjuerg Alder, Jeff Palatini, Massimo Negrini, Carlo M. Croce

published 10 Oct 2008

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MetaSim—A Sequencing Simulator for Genomics and Metagenomics

Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson

published 08 Oct 2008

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Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, Ying Huang, Rob Edwards, Weizhong Li, Paul Gilna, Ian Joint

published 22 Aug 2008

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Distilling Artificial Recombinants from Large Sets of Complete mtDNA Genomes

Qing-Peng Kong, Antonio Salas, Chang Sun, Noriyuki Fuku, Masashi Tanaka, Li Zhong, Cheng-Ye Wang, Yong-Gang Yao, Hans-Jürgen Bandelt

published 20 Aug 2008

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Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

Ani Qu, Jennifer M. Brulc, Melissa K. Wilson, Bibiana F. Law, James R. Theoret, Lynn A. Joens, Michael E. Konkel, Florent Angly, Elizabeth A. Dinsdale, Robert A. Edwards, Karen E. Nelson, Bryan A. White

published 13 Aug 2008

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Targeted Development of Registries of Biological Parts

Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, Kristal L. Cooper, Oswald Crasta, Emily C. DeLalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, Sally A. Waldon

published 16 Jul 2008

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Contextual Specificity in Peptide-Mediated Protein Interactions

Amelie Stein, Patrick Aloy

published 02 Jul 2008

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