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Biological databases

A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases

Prasanna Venkatraman, Satish Balakrishnan, [ ... ], Suyog Pol

How Large Is the Metabolome? A Critical Analysis of Data Exchange Practices in Chemistry

Tobias Kind, Martin Scholz, Oliver Fiehn

smyRNA: A Novel Ab Initio ncRNA Gene Finder

Raheleh Salari, Cagri Aksay, [ ... ], S. Cenk Sahinalp

An Estimate of the Numbers and Density of Low-Energy Structures (or Decoys) in the Conformational Landscape of Proteins

Kanagasabai Vadivel, Gautham Namasivayam

dndDB: A Database Focused on Phosphorothioation of the DNA Backbone

Hong-Yu Ou, Xinyi He, [ ... ], Zixin Deng

A Database of Domain Definitions for Proteins with Complex Interdomain Geometry

Indraneel Majumdar, Lisa N. Kinch, Nick V. Grishin

High-Throughput Proteomics Detection of Novel Splice Isoforms in Human Platelets

Karen A. Power, James P. McRedmond, [ ... ], Peadar Ó Gaora

Three New Structures of Left-Handed RadA Helical Filaments: Structural Flexibility of N-Terminal Domain Is Critical for Recombinase Activity

Yu-Wei Chang, Tzu-Ping Ko, [ ... ], Ting-Fang Wang

Drug Resistance Mutations for Surveillance of Transmitted HIV-1 Drug-Resistance: 2009 Update

Diane E. Bennett, Ricardo J. Camacho, [ ... ], Robert W. Shafer

Structural Model of the Rev Regulatory Protein from Equine Infectious Anemia Virus

Yungok Ihm, Wendy O. Sparks, [ ... ], Drena Dobbs

Variations in the Electrostatic Landscape of Class II Human Leukocyte Antigen Molecule Induced by Modifications in the Myelin Basic Protein Peptide: A Theoretical Approach

William A. Agudelo, Johan F. Galindo, [ ... ], Manuel E. Patarroyo

3640 Unique EST Clusters from the Medaka Testis and Their Potential Use for Identifying Conserved Testicular Gene Expression in Fish and Mammals

Lijan Lo, Zhenhai Zhang, [ ... ], Yunhan Hong

Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

Joseph M. Dybas, Carlos J. Madrid-Aliste, [ ... ], Andras Fiser

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