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Biological databases

Proteomic and Phospho-Proteomic Profile of Human Platelets in Basal, Resting State: Insights into Integrin Signaling

Amir H. Qureshi, Vineet Chaoji, Dony Maiguel, Mohd Hafeez Faridi, Constantinos J. Barth, Saeed M. Salem, Mudita Singhal, Darren Stoub, Bryan Krastins, Mitsunori Ogihara, Mohammed J. Zaki, Vineet Gupta

published 27 Oct 2009

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Accounting for Redundancy when Integrating Gene Interaction Databases

Antigoni Elefsinioti, Marit Ackermann, Andreas Beyer

published 22 Oct 2009

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SGC - Structural Biology and Human Health: A New Approach to Publishing Structural Biology Results

Wen Hwa Lee, Julián Atienza-Herrero, Ruben Abagyan, Brian D. Marsden

published 20 Oct 2009

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Assessment of Metabolome Annotation Quality: A Method for Evaluating the False Discovery Rate of Elemental Composition Searches

Fumio Matsuda, Yoko Shinbo, Akira Oikawa, Masami Yokota Hirai, Oliver Fiehn, Shigehiko Kanaya, Kazuki Saito

published 16 Oct 2009

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Sequence and Structure Signatures of Cancer Mutation Hotspots in Protein Kinases

Anshuman Dixit, Lin Yi, Ragul Gowthaman, Ali Torkamani, Nicholas J. Schork, Gennady M. Verkhivker

published 16 Oct 2009

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Oncogene Mutations, Copy Number Gains and Mutant Allele Specific Imbalance (MASI) Frequently Occur Together in Tumor Cells

Junichi Soh, Naoki Okumura, William W. Lockwood, Hiromasa Yamamoto, Hisayuki Shigematsu, Wei Zhang, Raj Chari, David S. Shames, Ximing Tang, Calum MacAulay, Marileila Varella-Garcia, Tõnu Vooder, Ignacio I. Wistuba, Stephen Lam, Rolf Brekken, Shinichi Toyooka, John D. Minna, Wan L. Lam, Adi F. Gazdar

published 14 Oct 2009

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Empirical Bayes Analysis of Quantitative Proteomics Experiments

Adam A. Margolin, Shao-En Ong, Monica Schenone, Robert Gould, Stuart L. Schreiber, Steven A. Carr, Todd R. Golub

published 14 Oct 2009

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Structural and Functional Similarity between the Bacterial Type III Secretion System Needle Protein PrgI and the Eukaryotic Apoptosis Bcl-2 Proteins

Matthew D. Shortridge, Robert Powers

published 13 Oct 2009

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Searching for New Clues about the Molecular Cause of Endomyocardial Fibrosis by Way of In Silico Proteomics and Analytical Chemistry

Misaki Wayengera

published 12 Oct 2009

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Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

Yong Wang, Pei-Yuan Qian

published 09 Oct 2009

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Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals

Dana Willner, Mike Furlan, Matthew Haynes, Robert Schmieder, Florent E. Angly, Joas Silva, Sassan Tammadoni, Bahador Nosrat, Douglas Conrad, Forest Rohwer

published 09 Oct 2009

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The Repertoire of Heterotrimeric G Proteins and RGS Proteins in Ciona intestinalis

R. Prasobh, Narayanan Manoj

published 06 Oct 2009

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Systems Integration of Biodefense Omics Data for Analysis of Pathogen-Host Interactions and Identification of Potential Targets

Peter B. McGarvey, Hongzhan Huang, Raja Mazumder, Jian Zhang, Yongxing Chen, Chengdong Zhang, Stephen Cammer, Rebecca Will, Margie Odle, Bruno Sobral, Margaret Moore, Cathy H. Wu

published 25 Sep 2009

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