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Biological databases

A Systematic Study of Gene Mutations in Urothelial Carcinoma; Inactivating Mutations in TSC2 and PIK3R1

Gottfrid Sjödahl, Martin Lauss, Sigurdur Gudjonsson, Fredrik Liedberg, Christer Halldén, Gunilla Chebil, Wiking Månsson, Mattias Höglund, David Lindgren

published 14 Apr 2011

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A Topological Framework for the Computation of the HOMFLY Polynomial and Its Application to Proteins

Federico Comoglio, Maurizio Rinaldi

published 13 Apr 2011

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Assignment of PolyProline II Conformation and Analysis of Sequence – Structure Relationship

Yohann Mansiaux, Agnel Praveen Joseph, Jean-Christophe Gelly, Alexandre G. de Brevern

published 31 Mar 2011

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Predicting Phenotypic Severity of Uncertain Gene Variants in the RET Proto-Oncogene

David K. Crockett, Stephen R. Piccolo, Perry G. Ridge, Rebecca L. Margraf, Elaine Lyon, Marc S. Williams, Joyce A. Mitchell

published 30 Mar 2011

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Comparison of Antibody Repertoires Produced by HIV-1 Infection, Other Chronic and Acute Infections, and Systemic Autoimmune Disease

Felix Breden, Christa Lepik, Nancy S. Longo, Marinieve Montero, Peter E. Lipsky, Jamie K. Scott

published 30 Mar 2011

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BRAF V600E Mutations Are Common in Pleomorphic Xanthoastrocytoma: Diagnostic and Therapeutic Implications

Dora Dias-Santagata, Quynh Lam, Kathy Vernovsky, Natalie Vena, Jochen K. Lennerz, Darrell R. Borger, Tracy T. Batchelor, Keith L. Ligon, A. John Iafrate, Azra H. Ligon, David N. Louis, Sandro Santagata

published 29 Mar 2011

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Transcriptome Analysis of the Desert Locust Central Nervous System: Production and Annotation of a Schistocerca gregaria EST Database

Liesbeth Badisco, Jurgen Huybrechts, Gert Simonet, Heleen Verlinden, Elisabeth Marchal, Roger Huybrechts, Liliane Schoofs, Arnold De Loof, Jozef Vanden Broeck

published 21 Mar 2011

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Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks

Garima Agarwal, Swapnil Mahajan, Narayanaswamy Srinivasan, Alexandre G. de Brevern

published 18 Mar 2011

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Structure and Function of the First Full-Length Murein Peptide Ligase (Mpl) Cell Wall Recycling Protein

Debanu Das, Mireille Hervé, Julie Feuerhelm, Carol L. Farr, Hsiu-Ju Chiu, Marc-André Elsliger, Mark W. Knuth, Heath E. Klock, Mitchell D. Miller, Adam Godzik, Scott A. Lesley, Ashley M. Deacon, Dominique Mengin-Lecreulx, Ian A. Wilson

published 18 Mar 2011

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DNA Barcoding of Catfish: Species Authentication and Phylogenetic Assessment

Li Lian Wong, Eric Peatman, Jianguo Lu, Huseyin Kucuktas, Shunping He, Chuanjiang Zhou, Uthairat Na-nakorn, Zhanjiang Liu

published 15 Mar 2011

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Assembling a Protein-Protein Interaction Map of the SSU Processome from Existing Datasets

Young H. Lim, J. Michael Charette, Susan J. Baserga

published 10 Mar 2011

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HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition

Charles Richard Bradshaw, Vineeth Surendranath, Robert Henschel, Matthias Stefan Mueller, Bianca Hermine Habermann

published 10 Mar 2011

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Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

Robert Schmieder, Robert Edwards

published 09 Mar 2011

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