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Biological databases

Proteomic machine-learning signatures associated with carotid plaque: A population-based hypothesis-generating study

Anna Szpakowicz, Wojciech Lesiński, Jakub K. Tuchliński, Urszula Roszkowska, Marlena Dubatówka, Zofia Stachurska, Marcin Kondraciuk, Witold R. Rudnicki, Karol A. Kamiński

published 24 Sep 2026

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Proteomic and lipidomic characterization of Hemipyrellia ligurriens larval extracts using LC-MS/MS and GC-MS: Identification of putative antimicrobial molecules and preliminary functional assessment

Pluemkamon Phuwanatsarunya, Sophit Khanthawong, Worasak Kaewkong, Tongjit Thanchomnang, Chaturong Inpad, Sudarat Onsurathum, Rapee Thummeepak, Ketsarin Thipphet, Kabkaew L. Sukontason, Tomomitsu Satho, Nophawan Bunchu

published 22 Sep 2026

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Integrated analysis of transcriptomic and proteomic profiles identifies divergent regulatory networks for intramuscular fat in Chinese versus Western Pigs

Caoyan Xu, Pengcheng Shen, Chang Sheng Jiang, Ahmed H. Ghonaim, Man Ren, Xiaojin Li, Qianqian Hu, Chonglong Wang

published 18 Sep 2026

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Computational screening of oncogenic genetic variations in tumor suppressor proteins driving gastric cancer pathogenesis

Faria Ferdouse Mim, Taslima Akter Sumiya, Roksana Khanam, Jannati Akter, Farhana Arzu, Samia Haque, Md. Roman Miah, K.M. Tanjida Islam, Shahin Mahmud

published 17 Sep 2026

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GenBank mining reveals novel insights into Rhizobium phylogeny: Identical 16S rRNA sequences are mainly uncoupled from species designation, host plant, and geographic origin: How this search suggested the definition of a direct ‘microbial h-index’

Rosella Muresu, Monica Rodriguez, Andrea Squartini

published 11 Sep 2026

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Whole exome sequencing and cluster analysis reveal that EPB41L4A mutation may trigger tooth agenesis

Tian-Qi Li, Qin Zhang, Hui-Juan Wang, Zhao-Feng Ma, Bing-Yu Lu, Ke-Gui Hou, Xiang-Yu Zhang

published 09 Sep 2026

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Correlation assessment of SARS-CoV-2 variants and their subvariants present in clinical and wastewater samples in Oregon, USA (February 7, 2021 - February 26, 2022) using the Freyja bioinformatics approach

Anirudh Bhatia, Justin Elser, Steven J. Carrell, Brent Kronmiller, Melissa Sutton, Christine Kelly, Tyler S. Radniecki

published 09 Sep 2026

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Acute Myeloid Leukemia(AML) proteins for in silico drug design using pharmacophore modeling, molecular docking and molecular dynamics simulation

Partho Bosu, Tonmoy Adhikary, Abu Sayed Rafi, Naveed Iqbal, Fatima Rasool, Payer Ahmed

published 02 Sep 2026

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Identifying DNA mutations in Sepia, White, Yellow, and Vestigial genes in D. melanogaster - Integrating inquiry-based experiential learning into undergraduate Genetics Laboratory curriculum

Krishna K. Rentachintala, Catherine A. K. Bricker, Parker R. Jain, Meera Nanjundan

published 01 Sep 2026

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Assessment of generative de novo peptide design methods for G protein-coupled receptors

Hannes Junker, Clara T. Schoeder

published 27 Aug 2026

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Systematic analysis of global O-serotype prevalence of neonatal extraintestinal pathogenic Escherichia coli: A protocol integrating previous research and bioinformatics databases

Dongmiao Zhang, Peicen Zou, Ruiqi Xiao, Jiacheng Li, Sihan Sheng, Ruoyi Xiao, Xiao Liang, Yajuan Wang

published 24 Aug 2026

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Proteomic characterization of adult Fasciola gigantica recovered from naturally infected buffaloes in Punjab Pakistan

Kinza Shahid, Mirza Imran Shahzad, Muhammad Ehsan, Rui-Si Hu, Areeba Yousaf, Gildardo Rivera, Muhammad Safdar, Muhammad Rashid, Muhammad Irfan Malik, Muhammad Mudasser Nazir

published 21 Aug 2026

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Assessing fish diversity in the Amazon: The impact of primers and reference libraries in eDNA surveys

Shizuka Hashimoto, Sarah V. Carvalho, Sonny de S. C. Miranda, Valéria N. Machado, Lucélia N. Carvalho, Cláudia P. de Deus, Izeni P. Farias, Tomas Hrbek

published 13 Aug 2026

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