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Bioinformatics

Metabarcoding targeting the EF1 alpha region to assess Fusarium diversity on cereals

Anne-Laure Boutigny, Angélique Gautier, Ryan Basler, Florian Dauthieux, Stephen Leite, Romain Valade, Jaime Aguayo, Renaud Ioos, Valérie Laval

published 11 Jan 2019

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Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

published 10 Jan 2019

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EMBL2checklists: A Python package to facilitate the user-friendly submission of plant and fungal DNA barcoding sequences to ENA

Michael Gruenstaeudl, Yannick Hartmaring

published 10 Jan 2019

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Sequence analysis and confirmation of the type IV pili-associated proteins PilY1, PilW and PilV in Acidithiobacillus thiooxidans

Elvia Alfaro-Saldaña, Araceli Hernández-Sánchez, O. Araceli Patrón-Soberano, Marizel Astello-García, J. Alfredo Méndez-Cabañas, J. Viridiana García-Meza

published 07 Jan 2019

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Homology and linkage in crossover for linear genomes of variable length

Adriaan Merlevede, Henrik Åhl, Carl Troein

published 03 Jan 2019

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Transcription of human endogenous retroviruses in human brain by RNA-seq analysis

Fang Li, Sarven Sabunciyan, Robert H. Yolken, Doheon Lee, Sanghyeon Kim, Håkan Karlsson

published 03 Jan 2019

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Characterization of novel lignocellulose-degrading enzymes from the porcupine microbiome using synthetic metagenomics

Mackenzie Thornbury, Jacob Sicheri, Patrick Slaine, Landon J. Getz, Emma Finlayson-Trick, Jamie Cook, Caroline Guinard, Nicholas Boudreau, David Jakeman, John Rohde, Craig McCormick

published 02 Jan 2019

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The taxonomy of an Australian nodavirus isolated from mosquitoes

David Warrilow, Bixing Huang, Natalee D. Newton, Jessica J. Harrison, Karyn N. Johnson, Weng Kong Chow, Roy A. Hall, Jody Hobson-Peters

published 31 Dec 2018

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A metatranscriptomic analysis of diseased social wasps (Vespula vulgaris) for pathogens, with an experimental infection of larvae and nests

Oliver Quinn, Monica A. M. Gruber, Robert L. Brown, James W. Baty, Mariana Bulgarella, Philip J. Lester

published 31 Dec 2018

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Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants

Emiko Murozuka, Julio A. Massange-Sánchez, Kasper Nielsen, Per L. Gregersen, Ilka Braumann

published 28 Dec 2018

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Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

Trygve E. Bakken, Rebecca D. Hodge, Jeremy A. Miller, Zizhen Yao, Thuc Nghi Nguyen, Brian Aevermann, Eliza Barkan, Darren Bertagnolli, Tamara Casper, Nick Dee, Emma Garren, Jeff Goldy, Lucas T. Graybuck, Matthew Kroll, Roger S. Lasken, Kanan Lathia, Sheana Parry, Christine Rimorin, Richard H. Scheuermann, Nicholas J. Schork, Soraya I. Shehata, Michael Tieu, John W. Phillips, Amy Bernard, Kimberly A. Smith, Hongkui Zeng, Ed S. Lein, Bosiljka Tasic

published 26 Dec 2018

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Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae

Chetan C. Gaonkar, Roberta Piredda, Carmen Minucci, David G. Mann, Marina Montresor, Diana Sarno, Wiebe H. C. F. Kooistra

published 26 Dec 2018

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Reduced RNA expression of the FMR1 gene in women with low (CGG_n<26) repeats

Qi Wang, David H. Barad, Sarah K. Darmon, Vitaly A. Kushnir, Yan-Guang Wu, Emanuela Lazzaroni-Tealdi, Lin Zhang, David F. Albertini, Norbert Gleicher

published 21 Dec 2018

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