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Bioinformatics

Evaluating topological variability in Neodermata phylogenies using mitochondrial and ribosomal gene markers

Víctor Hugo Caña-Bozada, Geormery Belén Mera-Loor, David I. Hernández-Mena, Jean-Lou Justine, Marta Álvarez-Presas

published 15 Oct 2025

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BLSAM-TIP: Improved and robust identification of tyrosinase inhibitory peptides by integrating bidirectional LSTM with self-attention mechanism

Saeed Ahmed, Nalini Schaduangrat, Pramote Chumnanpuen, S. M. Hasan Mahmud, Kah Ong Michael Goh, Watshara Shoombuatong

published 08 Oct 2025

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A novel TRPV5/6-like channel from a scleractinian coral

Angélica Méndez-Reséndiz, Gisela E. Rangel-Yescas, Miguel Benítez-Angeles, Tamara Rosenbaum, León D. Islas

published 07 Oct 2025

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A blueprint of synergistic effect in Crataegus pinnatifida and obesity-related gut microbiota against obesity via systems biology concept

Jinghui Xie, Haofang Guan, Maohui Liu, Weijun Ding

published 01 Oct 2025

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Framework for analyzing MAE-derived immunopeptidomes from cell lines with shared HLA haplotypes

Queenie W. T. Chan, Teesha C. Baker, Chia-Wei Kuan, Lucy Song, Hongbing Yu, Leonard J. Foster

published 25 Sep 2025

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Comparative maxicircle analysis in Trypanosoma species from the LSRM clade highlights patterns in an underexplored lineage

Fanny Rusman, Valeria Aramayo, Noelia Floridia-Yapur, Anahí Guadalupe Díaz, Tatiana Ponce, Soledad Hodi, Juan José Aguirre, Gonzalo Greif, Luisa Berná, Carlos Robello, Patricio Diosque, Nicolás Tomasini

published 22 Sep 2025

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Exploratory trajectory inference reveals convergent lineages for CD8 T cells in chronic LCMV infection

Jan T. Schleicher, Revant Gupta, Dario Cerletti, Ioana Sandu, Annette Oxenius, Manfred Claassen

published 19 Sep 2025

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Acute radiation exposure in mice reveals traces of oxidation-mediated modifications in serum albumin

Masaru Yamaguchi, Yota Tatara, Yoshiaki Sato, Ikuo Kashiwakura

published 19 Sep 2025

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Multi-objective representation learning for road networks and trajectories with spatial-temporal fusion and contrastive signals

Ashraful Islam Shanto Sikder, Naushin Nower

published 18 Sep 2025

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Transcriptomic analysis implicates the involvement of RBM20 in Fuchs’ endothelial corneal dystrophy with TCF4 repeat expansion

Xunzhi Zhang, Ze Yu, Aundrea K. Westfall, Kunyi Han, V. Vinod Mootha, Chao Xing

published 17 Sep 2025

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Neural SDE-based spike control of noisy neurons

Fumiya Sato, Masaki Ogura, Airi Sashie, Yang Bai, Masanori Shimono, Naoki Wakamiya

published 16 Sep 2025

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DiffDesign: Controllable diffusion with meta prior for efficient interior design generation

Tao Geng, Yuxuan Yang

published 04 Sep 2025

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LGMMFusion: A LiDAR-guided multi-modal fusion framework for enhanced 3D object detection

Haixing Cheng, Chengyong Liu, Wenzhe Gu, Yuyi Wu, Mengye Zhao, Wentao Liu, Naibang Wang

published 04 Sep 2025

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