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Bioinformatics

Exploring the genetic landscape of the Copper Homeostasis and Silver Resistance Island (CHASRI) in Salmonella enterica

Julie Haendiges, Eric W. Brown, Christina Ferreira, Maria Hoffmann, Elizabeth Reed, Jie Zheng, Rohan Tikekar

published 03 Nov 2025

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DNA barcoding for elasmobranch diversity assessment in Thailand: Its advantages and limitations

Jenjit Khudamrongsawat, Tassapon Krajangdara, Thadsin Panithanarak, Ratima Karuwancharoen, Wanlada Klangnurak, Pattarapon Promnun, Wansuk Senanan

published 31 Oct 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Immuno-informatics voyage through molecular mimicry of Heat Shock Proteins: Potential IBD immunopathogenesis

Mahsa Alem, Seyyed Meysam Abtahi Froushani, Nasim Hajighahramani, Saied Hosseini-Asl, Farhad Pourfarzi, Rasoul Nemati

published 16 Oct 2025

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Evaluating topological variability in Neodermata phylogenies using mitochondrial and ribosomal gene markers

Víctor Hugo Caña-Bozada, Geormery Belén Mera-Loor, David I. Hernández-Mena, Jean-Lou Justine, Marta Álvarez-Presas

published 15 Oct 2025

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BLSAM-TIP: Improved and robust identification of tyrosinase inhibitory peptides by integrating bidirectional LSTM with self-attention mechanism

Saeed Ahmed, Nalini Schaduangrat, Pramote Chumnanpuen, S. M. Hasan Mahmud, Kah Ong Michael Goh, Watshara Shoombuatong

published 08 Oct 2025

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A novel TRPV5/6-like channel from a scleractinian coral

Angélica Méndez-Reséndiz, Gisela E. Rangel-Yescas, Miguel Benítez-Angeles, Tamara Rosenbaum, León D. Islas

published 07 Oct 2025

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A blueprint of synergistic effect in Crataegus pinnatifida and obesity-related gut microbiota against obesity via systems biology concept

Jinghui Xie, Haofang Guan, Maohui Liu, Weijun Ding

published 01 Oct 2025

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Framework for analyzing MAE-derived immunopeptidomes from cell lines with shared HLA haplotypes

Queenie W. T. Chan, Teesha C. Baker, Chia-Wei Kuan, Lucy Song, Hongbing Yu, Leonard J. Foster

published 25 Sep 2025

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Comparative maxicircle analysis in Trypanosoma species from the LSRM clade highlights patterns in an underexplored lineage

Fanny Rusman, Valeria Aramayo, Noelia Floridia-Yapur, Anahí Guadalupe Díaz, Tatiana Ponce, Soledad Hodi, Juan José Aguirre, Gonzalo Greif, Luisa Berná, Carlos Robello, Patricio Diosque, Nicolás Tomasini

published 22 Sep 2025

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Exploratory trajectory inference reveals convergent lineages for CD8 T cells in chronic LCMV infection

Jan T. Schleicher, Revant Gupta, Dario Cerletti, Ioana Sandu, Annette Oxenius, Manfred Claassen

published 19 Sep 2025

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Acute radiation exposure in mice reveals traces of oxidation-mediated modifications in serum albumin

Masaru Yamaguchi, Yota Tatara, Yoshiaki Sato, Ikuo Kashiwakura

published 19 Sep 2025

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Multi-objective representation learning for road networks and trajectories with spatial-temporal fusion and contrastive signals

Ashraful Islam Shanto Sikder, Naushin Nower

published 18 Sep 2025

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