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Bioinformatics

Species Specificity in Major Urinary Proteins by Parallel Evolution

Darren W. Logan, Tobias F. Marton, Lisa Stowers

published 25 Sep 2008

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On Evaluating MHC-II Binding Peptide Prediction Methods

Yasser EL-Manzalawy, Drena Dobbs, Vasant Honavar

published 24 Sep 2008

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A Recoding Method to Improve the Humoral Immune Response to an HIV DNA Vaccine

Yaoxing Huang, Michael Krasnitz, Raul Rabadan, Daniela M. Witten, Yang Song, Arnold J. Levine, David D. Ho, Harlan Robins

published 15 Sep 2008

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High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

published 12 Sep 2008

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Genetic Analysis of HIV-1 Subtypes in Nairobi, Kenya

Suhail Khoja, Peter Ojwang, Saeed Khan, Nancy Okinda, Reena Harania, Syed Ali

published 11 Sep 2008

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Comparative Analysis of mRNA Targets for Human PUF-Family Proteins Suggests Extensive Interaction with the miRNA Regulatory System

Alessia Galgano, Michael Forrer, Lukasz Jaskiewicz, Alexander Kanitz, Mihaela Zavolan, André P. Gerber

published 08 Sep 2008

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Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression

André Boorsma, Xiang-Jun Lu, Anna Zakrzewska, Frans M. Klis, Harmen J. Bussemaker

published 03 Sep 2008

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Small Deletion Variants Have Stable Breakpoints Commonly Associated with Alu Elements

Adam J. de Smith, Robin G. Walters, Lachlan J. M. Coin, Israel Steinfeld, Zohar Yakhini, Rob Sladek, Philippe Froguel, Alexandra I. F. Blakemore

published 29 Aug 2008

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Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

published 29 Aug 2008

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A Translation Initiation Element Specific to mRNAs with Very Short 5′UTR that Also Regulates Transcription

Rofa Elfakess, Rivka Dikstein

published 28 Aug 2008

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Horizontal Gene Transfers Link a Human MRSA Pathogen to Contagious Bovine Mastitis Bacteria

Thomas Brody, Amarendra S. Yavatkar, Yong Lin, Jermaine Ross, Alexander Kuzin, Mukta Kundu, Yang Fann, Ward F. Odenwald

published 27 Aug 2008

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Bioactive Endophytes Warrant Intensified Exploration and Conservation

Stephen A. Smith, David C. Tank, Lori-Ann Boulanger, Carol A. Bascom-Slack, Kaury Eisenman, David Kingery, Beatrice Babbs, Kathleen Fenn, Joshua S. Greene, Bradley D. Hann, Jocelyn Keehner, Elizabeth G. Kelley-Swift, Vivek Kembaiyan, Sun Jin Lee, Puyao Li, David Y. Light, Emily H. Lin, Cong Ma, Emily Moore, Michelle A. Schorn, Daniel Vekhter, Percy V. Nunez, Gary A. Strobel, Michael J. Donoghue, Scott A. Strobel

published 25 Aug 2008

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Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, Ying Huang, Rob Edwards, Weizhong Li, Paul Gilna, Ian Joint

published 22 Aug 2008

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