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Bioinformatics

Rapid Changes in Gene Expression Dynamics in Response to Superoxide Reveal SoxRS-Dependent and Independent Transcriptional Networks

Jeffrey L. Blanchard, Wei-Yun Wholey, Erin M. Conlon, Pablo J. Pomposiello

published 14 Nov 2007

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NF-κB/Rel-Mediated Regulation of the Neural Fate in Drosophila

Savita Ayyar, Daniela Pistillo, Manuel Calleja, Anna Brookfield, Kelly Gittins, Claire Goldstone, Pat Simpson

published 14 Nov 2007

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DNA Barcoding in the Cycadales: Testing the Potential of Proposed Barcoding Markers for Species Identification of Cycads

Chodon Sass, Damon P. Little, Dennis Wm. Stevenson, Chelsea D. Specht

published 07 Nov 2007

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Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes

Stein Aerts, Jacques van Helden, Olivier Sand, Bassem A. Hassan

published 07 Nov 2007

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Identification and Classification of Hubs in Brain Networks

Olaf Sporns, Christopher J. Honey, Rolf Kötter

published 17 Oct 2007

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Nullomers: Really a Matter of Natural Selection?

Claudia Acquisti, George Poste, David Curtiss, Sudhir Kumar

published 10 Oct 2007

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Conservation, Variability and the Modeling of Active Protein Kinases

James D. R. Knight, Bin Qian, David Baker, Rashmi Kothary

published 03 Oct 2007

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SLiMFinder: A Probabilistic Method for Identifying Over-Represented, Convergently Evolved, Short Linear Motifs in Proteins

Richard J. Edwards, Norman E. Davey, Denis C. Shields

published 03 Oct 2007

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Complete Genomic Characterization of a Pathogenic A.II Strain of Francisella tularensis Subspecies tularensis

Stephen M. Beckstrom-Sternberg, Raymond K. Auerbach, Shubhada Godbole, John V. Pearson, James S. Beckstrom-Sternberg, Zuoming Deng, Christine Munk, Kristy Kubota, Yan Zhou, David Bruce, Jyothi Noronha, Richard H. Scheuermann, Aihui Wang, Xianying Wei, Jianjun Wang, Jicheng Hao, David M. Wagner, Thomas S. Brettin, Nancy Brown, Paul Gilna, Paul S. Keim

published 26 Sep 2007

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Mammalian MicroRNA Prediction through a Support Vector Machine Model of Sequence and Structure

Ying Sheng, Pär G. Engström, Boris Lenhard

published 26 Sep 2007

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Early Evolution of Ionotropic GABA Receptors and Selective Regimes Acting on the Mammalian-Specific Theta and Epsilon Subunits

Christopher J. Martyniuk, Stéphane Aris-Brosou, Guy Drouin, Joel Cahn, Vance L. Trudeau

published 19 Sep 2007

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Structural and Functional Analyses of Five Conserved Positively Charged Residues in the L1 and N-Terminal DNA Binding Motifs of Archaeal RadA Protein

Li-Tzu Chen, Tzu-Ping Ko, Yu-Wei Chang, Kuei-An Lin, Andrew H.-J. Wang, Ting-Fang Wang

published 12 Sep 2007

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Wide-Scale Analysis of Human Functional Transcription Factor Binding Reveals a Strong Bias towards the Transcription Start Site

Yuval Tabach, Ran Brosh, Yossi Buganim, Anat Reiner, Or Zuk, Assif Yitzhaky, Mark Koudritsky, Varda Rotter, Eytan Domany

published 29 Aug 2007

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