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Bioinformatics

Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

Akira R. Kinjo, Haruki Nakamura

published 09 Apr 2008

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Alignment of Non-Covalent Interactions at Protein-Protein Interfaces

Hongbo Zhu, Ingolf Sommer, Thomas Lengauer, Francisco S. Domingues

published 02 Apr 2008

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The Airborne Metagenome in an Indoor Urban Environment

Susannah G. Tringe, Tao Zhang, Xuguo Liu, Yiting Yu, Wah Heng Lee, Jennifer Yap, Fei Yao, Sim Tiow Suan, Seah Keng Ing, Matthew Haynes, Forest Rohwer, Chia Lin Wei, Patrick Tan, James Bristow, Edward M. Rubin, Yijun Ruan

published 02 Apr 2008

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Distinguishing Molecular Features and Clinical Characteristics of a Putative New Rhinovirus Species, Human Rhinovirus C (HRV C)

Peter McErlean, Laura A. Shackelton, Emily Andrews, Dale R. Webster, Stephen B. Lambert, Michael D. Nissen, Theo P. Sloots, Ian M. Mackay

published 02 Apr 2008

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Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources

Harri Lähdesmäki, Alistair G. Rust, Ilya Shmulevich

published 26 Mar 2008

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Improving Phrap-Based Assembly of the Rat Using “Reliable” Overlaps

Michael Roberts, Aleksey V. Zimin, Wayne Hayes, Brian R. Hunt, Cevat Ustun, James R. White, Paul Havlak, James Yorke

published 19 Mar 2008

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Identification of Direct Target Genes Using Joint Sequence and Expression Likelihood with Application to DAF-16

Ron X. Yu, Jie Liu, Nick True, Wei Wang

published 19 Mar 2008

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Conservation Patterns of HIV-1 RT Connection and RNase H Domains: Identification of New Mutations in NRTI-Treated Patients

André F. A. Santos, Renan B. Lengruber, Esmeralda A. Soares, Abhay Jere, Eduardo Sprinz, Ana M. B. Martinez, Jussara Silveira, Fernando S. Sion, Vinay K. Pathak, Marcelo A. Soares

published 12 Mar 2008

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Origin and Evolution of GALA-LRR, a New Member of the CC-LRR Subfamily: From Plants to Bacteria?

Andrey V. Kajava, Maria Anisimova, Nemo Peeters

published 27 Feb 2008

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Recombination and Population Mosaic of a Multifunctional Viral Gene, Adeno-Associated Virus cap

Yasuhiro Takeuchi, Richard Myers, Olivier Danos

published 20 Feb 2008

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Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

published 20 Feb 2008

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A Three-Stage Colonization Model for the Peopling of the Americas

Andrew Kitchen, Michael M. Miyamoto, Connie J. Mulligan

published 13 Feb 2008

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Accumulating Variation at Conserved Sites in Potyvirus Genomes Is Driven by Species Discovery and Affects Degenerate Primer Design

Linda Zheng, Paul J. Wayper, Adrian J. Gibbs, Mathieu Fourment, Brendan C. Rodoni, Mark J. Gibbs

published 13 Feb 2008

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