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Bioinformatics

On Evaluating MHC-II Binding Peptide Prediction Methods

Yasser EL-Manzalawy, Drena Dobbs, Vasant Honavar

A Recoding Method to Improve the Humoral Immune Response to an HIV DNA Vaccine

Yaoxing Huang, Michael Krasnitz, [ ... ], Harlan Robins

High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

Genetic Analysis of HIV-1 Subtypes in Nairobi, Kenya

Suhail Khoja, Peter Ojwang, [ ... ], Syed Ali

Comparative Analysis of mRNA Targets for Human PUF-Family Proteins Suggests Extensive Interaction with the miRNA Regulatory System

Alessia Galgano, Michael Forrer, [ ... ], André P. Gerber

Inferring Condition-Specific Modulation of Transcription Factor Activity in Yeast through Regulon-Based Analysis of Genomewide Expression

André Boorsma, Xiang-Jun Lu, [ ... ], Harmen J. Bussemaker

Small Deletion Variants Have Stable Breakpoints Commonly Associated with Alu Elements

Adam J. de Smith, Robin G. Walters, [ ... ], Alexandra I. F. Blakemore

Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

A Translation Initiation Element Specific to mRNAs with Very Short 5′UTR that Also Regulates Transcription

Rofa Elfakess, Rivka Dikstein

Horizontal Gene Transfers Link a Human MRSA Pathogen to Contagious Bovine Mastitis Bacteria

Thomas Brody, Amarendra S. Yavatkar, [ ... ], Ward F. Odenwald

Bioactive Endophytes Warrant Intensified Exploration and Conservation

Stephen A. Smith, David C. Tank, [ ... ], Scott A. Strobel

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities

Jack A. Gilbert, Dawn Field, [ ... ], Ian Joint

HIV Replication Enhances Production of Free Fatty Acids, Low Density Lipoproteins and Many Key Proteins Involved in Lipid Metabolism: A Proteomics Study

Suraiya Rasheed, Jasper S. Yan, Alex Lau, Arvan S. Chan

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