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Bioinformatics

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function

Sankaran Sandhya, Saane Sudha Rani, Barah Pankaj, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini

published 31 Mar 2009

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The Oncogenic EWS-FLI1 Protein Binds In Vivo GGAA Microsatellite Sequences with Potential Transcriptional Activation Function

Noëlle Guillon, Franck Tirode, Valentina Boeva, Andrei Zynovyev, Emmanuel Barillot, Olivier Delattre

published 23 Mar 2009

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Role of 3′UTRs in the Translation of mRNAs Regulated by Oncogenic eIF4E—A Computational Inference

Arti N. Santhanam, Eckart Bindewald, Vinagolu K. Rajasekhar, Ola Larsson, Nahum Sonenberg, Nancy H. Colburn, Bruce A. Shapiro

published 17 Mar 2009

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RBF-TSS: Identification of Transcription Start Site in Human Using Radial Basis Functions Network and Oligonucleotide Positional Frequencies

Rami N. Mahdi, Eric C. Rouchka

published 16 Mar 2009

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Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Shinichi Sunagawa, Michael K. DeSalvo, Christian R. Voolstra, Alejandro Reyes-Bermudez, Mónica Medina

published 13 Mar 2009

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An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved

Joseph J. Gillespie, Nicole C. Ammerman, Sheila M. Dreher-Lesnick, M. Sayeedur Rahman, Micah J. Worley, Joao C. Setubal, Bruno S. Sobral, Abdu F. Azad

published 12 Mar 2009

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The Action of Key Factors in Protein Evolution at High Temporal Resolution

Armin Schmitt, Johannes Schuchhardt, Gudrun A. Brockmann

published 12 Mar 2009

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Transcript-Specific Expression Profiles Derived from Sequence-Based Analysis of Standard Microarrays

Anton G. Moll, Maja T. Lindenmeyer, Matthias Kretzler, Peter J. Nelson, Ralf Zimmer, Clemens D. Cohen

published 11 Mar 2009

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Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution

Daniel Y. Little, Lu Chen

published 10 Mar 2009

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Structure of the Archaeal Pab87 Peptidase Reveals a Novel Self-Compartmentalizing Protease Family

Vanessa Delfosse, Eric Girard, Catherine Birck, Michaël Delmarcelle, Marc Delarue, Olivier Poch, Patrick Schultz, Claudine Mayer

published 05 Mar 2009

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Computing Highly Correlated Positions Using Mutual Information and Graph Theory for G Protein-Coupled Receptors

Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow

published 05 Mar 2009

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Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, Riccardo Velasco, Elide Formentin, Stefano Toppo

published 27 Feb 2009

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Transcription Factor Binding Sites Are Genetic Determinants of Retroviral Integration in the Human Genome

Barbara Felice, Claudia Cattoglio, Davide Cittaro, Anna Testa, Annarita Miccio, Giuliana Ferrari, Lucilla Luzi, Alessandra Recchia, Fulvio Mavilio

published 24 Feb 2009

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