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Bioinformatics

Probing the Putative Active Site of YjdL: An Unusual Proton-Coupled Oligopeptide Transporter from E. coli

Johanne Mørch Jensen, Fouzia Ismat, [ ... ], Osman Mirza

Prediction of Protein Phosphorylation Sites by Using the Composition of k-Spaced Amino Acid Pairs

Xiaowei Zhao, Wenyi Zhang, [ ... ], Minghao Yin

Tat–Dependent Translocation of an F₄₂₀–Binding Protein of Mycobacterium tuberculosis

Ghader Bashiri, Ellen F. Perkowski, [ ... ], Edward N. Baker

ExpI and PhzI Are Descendants of the Long Lost Cognate Signal Synthase for SdiA

Anice Sabag-Daigle, Brian M. M. Ahmer

MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit

Jens Roat Kultima, Shinichi Sunagawa, [ ... ], Peer Bork

Analysis of Intron Sequence Features Associated with Transcriptional Regulation in Human Genes

Huimin Li, Dan Chen, Jing Zhang

Genome-Wide Identification and Analysis of MAPK and MAPKK Gene Families in Brachypodium distachyon

Lihong Chen, Wei Hu, [ ... ], Guangyuan He

Accurate Simulation and Detection of Coevolution Signals in Multiple Sequence Alignments

Sharon H. Ackerman, Elisabeth R. Tillier, Domenico L. Gatti

Tick-Box for 3′-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila

Matteo Montagna, Davide Sassera, [ ... ], Carmela Gissi

Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana

Felipe Leal Valentim, Frank Neven, Peter Boyen, Aalt D. J. van Dijk

A Hybrid Distance Measure for Clustering Expressed Sequence Tags Originating from the Same Gene Family

Keng-Hoong Ng, Chin-Kuan Ho, Somnuk Phon-Amnuaisuk

lociNGS: A Lightweight Alternative for Assessing Suitability of Next-Generation Loci for Evolutionary Analysis

Sarah M. Hird

The Pectin Lyases in Arabidopsis thaliana: Evolution, Selection and Expression Profiles

Jun Cao

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