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Bioinformatics

BioAssemblyModeler (BAM): User-Friendly Homology Modeling of Protein Homo- and Heterooligomers

Maxim V. Shapovalov, Qiang Wang, Qifang Xu, Mark Andrake, Roland L. Dunbrack Jr

published 12 Jun 2014

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Establishment of a Simple and Rapid Identification Method for Listeria spp. by Using High-Resolution Melting Analysis, and Its Application in Food Industry

Chihiro Ohshima, Hajime Takahashi, Chirapiphat Phraephaisarn, Mongkol Vesaratchavest, Suwimon Keeratipibul, Takashi Kuda, Bon Kimura

published 11 Jun 2014

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HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Luis Santana-Quintero, Hayley Dingerdissen, Jean Thierry-Mieg, Raja Mazumder, Vahan Simonyan

published 11 Jun 2014

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Discovery and Characterization of Distinct Simian Pegiviruses in Three Wild African Old World Monkey Species

Samuel D. Sibley, Michael Lauck, Adam L. Bailey, David Hyeroba, Alex Tumukunde, Geoffrey Weny, Colin A. Chapman, David H. O’Connor, Tony L. Goldberg, Thomas C. Friedrich

published 11 Jun 2014

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Complex Interplay among DNA Modification, Noncoding RNA Expression and Protein-Coding RNA Expression in Salvia miltiorrhiza Chloroplast Genome

Haimei Chen, Jianhui Zhang, George Yuan, Chang Liu

published 10 Jun 2014

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CELLO2GO: A Web Server for Protein subCELlular LOcalization Prediction with Functional Gene Ontology Annotation

Chin-Sheng Yu, Chih-Wen Cheng, Wen-Chi Su, Kuei-Chung Chang, Shao-Wei Huang, Jenn-Kang Hwang, Chih-Hao Lu

published 09 Jun 2014

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Evaluation of a Pooled Strategy for High-Throughput Sequencing of Cosmid Clones from Metagenomic Libraries

Kathy N. Lam, Michael W. Hall, Katja Engel, Gregory Vey, Jiujun Cheng, Josh D. Neufeld, Trevor C. Charles

published 09 Jun 2014

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GASOLINE: a Greedy And Stochastic algorithm for Optimal Local multiple alignment of Interaction NEtworks

Giovanni Micale, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro

published 09 Jun 2014

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The Subfamily-Specific Interaction between Kv2.1 and Kv6.4 Subunits Is Determined by Interactions between the N- and C-termini

Elke Bocksteins, Evy Mayeur, Abbi Van Tilborg, Glenn Regnier, Jean-Pierre Timmermans, Dirk J. Snyders

published 05 Jun 2014

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Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection

Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, Sadok Ben Yahia, Olivier Gascuel, Laurent Bréhélin

published 05 Jun 2014

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CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce

Wei-Chun Chung, Chien-Chih Chen, Jan-Ming Ho, Chung-Yen Lin, Wen-Lian Hsu, Yu-Chun Wang, D. T. Lee, Feipei Lai, Chih-Wei Huang, Yu-Jung Chang

published 04 Jun 2014

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AST: An Automated Sequence-Sampling Method for Improving the Taxonomic Diversity of Gene Phylogenetic Trees

Chan Zhou, Fenglou Mao, Yanbin Yin, Jinling Huang, Johann Peter Gogarten, Ying Xu

published 03 Jun 2014

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Absence of an Intron Splicing Silencer in Porcine Smn1 Intron 7 Confers Immunity to the Exon Skipping Mutation in Human SMN2

Thomas Koed Doktor, Lisbeth Dahl Schrøder, Henriette Skovgaard Andersen, Sabrina Brøner, Anna Kitewska, Charlotte Brandt Sørensen, Brage Storstein Andresen

published 03 Jun 2014

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