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Bioinformatics

HrrF Is the Fur-Regulated Small RNA in Nontypeable Haemophilus influenzae

Estevan A. Santana, Alistair Harrison, Xinjun Zhang, Beth D. Baker, Benjamin J. Kelly, Peter White, Yunlong Liu, Robert S. Munson Jr

published 26 Aug 2014

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STATdb: A Specialised Resource for the STATome

C. Pawan K. Patro, Asif M. Khan, Tin Wee Tan, Xin-Yuan Fu

published 26 Aug 2014

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Transcriptome Wide Identification and Validation of Calcium Sensor Gene Family in the Developing Spikes of Finger Millet Genotypes for Elucidating Its Role in Grain Calcium Accumulation

Uma M. Singh, Muktesh Chandra, Shailesh C. Shankhdhar, Anil Kumar

published 26 Aug 2014

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OptMAVEn – A New Framework for the de novo Design of Antibody Variable Region Models Targeting Specific Antigen Epitopes

Tong Li, Robert J. Pantazes, Costas D. Maranas

published 25 Aug 2014

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A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster

Yosvany López, Alexis Vandenbon, Kenta Nakai

published 25 Aug 2014

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Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

published 22 Aug 2014

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Purification and Characterization of Plantaricin ZJ5, a New Bacteriocin Produced by Lactobacillus plantarum ZJ5

Da-Feng Song, Mu-Yuan Zhu, Qing Gu

published 22 Aug 2014

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Large-Scale Phylogenetic Classification of Fungal Chitin Synthases and Identification of a Putative Cell-Wall Metabolism Gene Cluster in Aspergillus Genomes

Jose Ramon Pacheco-Arjona, Jorge Humberto Ramirez-Prado

published 22 Aug 2014

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Choice of Reference Sequence and Assembler for Alignment of Listeria monocytogenes Short-Read Sequence Data Greatly Influences Rates of Error in SNP Analyses

Arthur W. Pightling, Nicholas Petronella, Franco Pagotto

published 21 Aug 2014

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Insertions or Deletions (Indels) in the rrn 16S-23S rRNA Gene Internal Transcribed Spacer Region (ITS) Compromise the Typing and Identification of Strains within the Acinetobacter calcoaceticus-baumannii (Acb) Complex and Closely Related Members

Christopher Maslunka, Bianca Gifford, Joseph Tucci, Volker Gürtler, Robert J. Seviour

published 20 Aug 2014

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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

published 20 Aug 2014

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Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members

Chiho Suzuki, Kohei Kawazuma, Shoichiro Horita, Tohru Terada, Masaru Tanokura, Kazunori Okada, Hisakazu Yamane, Hideaki Nojiri

published 19 Aug 2014

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A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, Jad N. Kanbar, Jianbin Wang, Charles Gawad, Stephen R. Quake

published 19 Aug 2014

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