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Bioinformatics

Time-Course Analysis of Brain Regional Expression Network Responses to Chronic Intermittent Ethanol and Withdrawal: Implications for Mechanisms Underlying Excessive Ethanol Consumption

Maren L. Smith, Marcelo F. Lopez, [ ... ], Michael F. Miles

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Loren A. Honaas, Eric K. Wafula, [ ... ], Claude W. dePamphilis

“Candidatus Fokinia solitaria”, a Novel “Stand-Alone” Symbiotic Lineage of Midichloriaceae (Rickettsiales)

Franziska Szokoli, Elena Sabaneyeva, [ ... ], Giulio Petroni

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC++

Jorge González-Domínguez, Yongchao Liu, Bertil Schmidt

Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas

Teresita M. Porter, Shadi Shokralla, [ ... ], Mehrdad Hajibabaei

Characterization and Expression of the Zebrafish qki Paralogs

Katarzyna J. Radomska, Jonathan Sager, [ ... ], Lina S. Emilsson

Characterization of Oyster Voltage-Dependent Anion Channel 2 (VDAC2) Suggests Its Involvement in Apoptosis and Host Defense

Yingxiang Li, Linlin Zhang, [ ... ], Guofan Zhang

SW#db: GPU-Accelerated Exact Sequence Similarity Database Search

Matija Korpar, Martin Šošić, Dino Blažeka, Mile Šikić

Identification of a Flavivirus Sequence in a Marine Arthropod

Michael J. Conway

Identification of Promotor and Exonic Variations, and Functional Characterization of a Splice Site Mutation in Indian Patients with Unconjugated Hyperbilirubinemia

Neha Gupta, Mercilena Benjamin, [ ... ], Rakesh Aggarwal

Application of a Novel “Pan-Genome”-Based Strategy for Assigning RNAseq Transcript Reads to Staphylococcus aureus Strains

Diego Chaves-Moreno, Melissa L. Wos-Oxley, [ ... ], Dietmar H. Pieper

Structural Motifs Critical for In Vivo Function and Stability of the RecQ-Mediated Genome Instability Protein Rmi1

Jessica A. Kennedy, Salahuddin Syed, Kristina H. Schmidt

In Silico Comparative Transcriptome Analysis of Two Color Morphs of the Common Coral Trout (Plectropomus Leopardus)

Le Wang, Cuiping Yu, [ ... ], Zining Meng

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