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Bioinformatics

A Follow-Up of the Multicenter Collaborative Study on HIV-1 Drug Resistance and Tropism Testing Using 454 Ultra Deep Pyrosequencing

Elizabeth P. St. John, Birgitte B. Simen, [ ... ], 454 HIV-1 Alpha Study Group

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids, Floor Hugenholtz, [ ... ], Peter J. Schaap

Identification and Functional Analysis of the Mycophenolic Acid Gene Cluster of Penicillium roqueforti

Abdiel Del-Cid, Carlos Gil-Durán, [ ... ], Renato Chávez

Differential Expression of Proteins Associated with the Hair Follicle Cycle - Proteomics and Bioinformatics Analyses

Lei Wang, Wenrong Xu, [ ... ], Weixin Fan

Use of a Probabilistic Motif Search to Identify Histidine Phosphotransfer Domain-Containing Proteins

Defne Surujon, David I. Ratner

Discovery and Characterization of a Thermostable and Highly Halotolerant GH5 Cellulase from an Icelandic Hot Spring Isolate

Dimitra Zarafeta, Dimitrios Kissas, [ ... ], Fragiskos N. Kolisis

DNA Barcode Analysis of Thrips (Thysanoptera) Diversity in Pakistan Reveals Cryptic Species Complexes

Romana Iftikhar, Muhammad Ashfaq, Akhtar Rasool, Paul D. N. Hebert

Comparing Residue Clusters from Thermophilic and Mesophilic Enzymes Reveals Adaptive Mechanisms

Deanne W. Sammond, Noah Kastelowitz, [ ... ], Yannick J. Bomble

Estimation of a Killer Whale (Orcinus orca) Population’s Diet Using Sequencing Analysis of DNA from Feces

Michael J. Ford, Jennifer Hempelmann, [ ... ], Linda K. Park

SeqFeatR for the Discovery of Feature-Sequence Associations

Bettina Budeus, Jörg Timm, Daniel Hoffmann

Decoding Biomass-Sensing Regulons of Clostridium thermocellum Alternative Sigma-I Factors in a Heterologous Bacillus subtilis Host System

Iván Muñoz-Gutiérrez, Lizett Ortiz de Ora, [ ... ], Ilya Borovok

Time-Course Analysis of Brain Regional Expression Network Responses to Chronic Intermittent Ethanol and Withdrawal: Implications for Mechanisms Underlying Excessive Ethanol Consumption

Maren L. Smith, Marcelo F. Lopez, [ ... ], Michael F. Miles

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

Loren A. Honaas, Eric K. Wafula, [ ... ], Claude W. dePamphilis

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