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Biochemical simulations

Intracellular Electric Field and pH Optimize Protein Localization and Movement

Jessica Cunningham, Veronica Estrella, [ ... ], Robert Gatenby

Direct and Allosteric Inhibition of the FGF2/HSPGs/FGFR1 Ternary Complex Formation by an Antiangiogenic, Thrombospondin-1-Mimic Small Molecule

Katiuscia Pagano, Rubben Torella, [ ... ], Laura Ragona

Insight into the Stability of Cross-β Amyloid Fibril from VEALYL Short Peptide with Molecular Dynamics Simulation

Wei Ye, Yue Chen, [ ... ], Hai-Feng Chen

Investigation of the Acetylation Mechanism by GCN5 Histone Acetyltransferase

Junfeng Jiang, Junyan Lu, [ ... ], Cheng Luo

Sequencing by Hybridization of Long Targets

Yu Qin, Tobias M. Schneider, Michael P. Brenner

Noise Propagation in Two-Step Series MAPK Cascade

Venkata Dhananjaneyulu, Vidya Nanda Sagar P, Gopalakrishnan Kumar, Ganesh A. Viswanathan

Are Coiled-Coils of Dimeric Kinesins Unwound during Their Walking on Microtubule?

Zhao-Wen Duan, Ping Xie, Wei Li, Peng-Ye Wang

Mechanisms of Intramolecular Communication in a Hyperthermophilic Acylaminoacyl Peptidase: A Molecular Dynamics Investigation

Elena Papaleo, Giulia Renzetti, Matteo Tiberti

Why Do Protein Folding Rates Correlate with Metrics of Native Topology?

Patrícia F. N. Faísca, Rui D. M. Travasso, Andrea Parisi, Antonio Rey

Analysis of the Nse3/MAGE-Binding Domain of the Nse4/EID Family Proteins

Marc Guerineau, Zdenek Kriz, [ ... ], Jan Palecek

Allosteric Analysis of Glucocorticoid Receptor-DNA Interface Induced by Cyclic Py-Im Polyamide: A Molecular Dynamics Simulation Study

Yaru Wang, Na Ma, Yan Wang, Guangju Chen

Protein High-Force Pulling Simulations Yield Low-Force Results

Seth Lichter, Benjamin Rafferty, Zachary Flohr, Ashlie Martini

The Role of Methylation in the Intrinsic Dynamics of B- and Z-DNA

Nuri A. Temiz, Duncan E. Donohue, [ ... ], Jack R. Collins

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