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Biochemical simulations

Phosphoproteomics-Based Modeling Defines the Regulatory Mechanism Underlying Aberrant EGFR Signaling

Shinya Tasaki, Masao Nagasaki, [ ... ], Masaaki Oyama

Nonnative Interactions in Coupled Folding and Binding Processes of Intrinsically Disordered Proteins

Yongqi Huang, Zhirong Liu

A Geometrical Model for DNA Organization in Bacteria

Mathias Buenemann, Peter Lenz

Multiple Routes and Milestones in the Folding of HIV–1 Protease Monomer

Massimiliano Bonomi, Alessandro Barducci, Francesco L. Gervasio, Michele Parrinello

Modelling the Role of UCH-L1 on Protein Aggregation in Age-Related Neurodegeneration

Carole J. Proctor, Paul J. Tangeman, Helen C. Ardley

An Improved Strategy for Generating Forces in Steered Molecular Dynamics: The Mechanical Unfolding of Titin, e2lip3 and Ubiquitin

Bosco K. Ho, David A. Agard

Triglyceride Blisters in Lipid Bilayers: Implications for Lipid Droplet Biogenesis and the Mobile Lipid Signal in Cancer Cell Membranes

Himanshu Khandelia, Lars Duelund, Kirsi I. Pakkanen, John H. Ipsen

Molecular Modeling Study for Interaction between Bacillus subtilis Obg and Nucleotides

Yuno Lee, Woo Young Bang, [ ... ], Keun Woo Lee

Plasticity of Intermediate Filament Subunits

Robert Kirmse, Zhao Qin, [ ... ], Laurent Kreplak

A Didactic Model of Macromolecular Crowding Effects on Protein Folding

Douglas Tsao, Allen P. Minton, Nikolay V. Dokholyan

The Role of Type 4 Phosphodiesterases in Generating Microdomains of cAMP: Large Scale Stochastic Simulations

Rodrigo F. Oliveira, Anna Terrin, [ ... ], Kim T. Blackwell

Rationalisation of the Differences between APOBEC3G Structures from Crystallography and NMR Studies by Molecular Dynamics Simulations

Flavia Autore, Julien R. C. Bergeron, [ ... ], Hendrik Huthoff

Cholesterol Induces Specific Spatial and Orientational Order in Cholesterol/Phospholipid Membranes

Hector Martinez-Seara, Tomasz Róg, [ ... ], Ramon Reigada

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