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Bacterial taxonomy

Evaluation of shotgun metagenomics as a diagnostic tool for infectious gastroenteritis

Kjersti Haugum, Anuradha Ravi, Jan Egil Afset, Christina Gabrielsen Ås

published 02 Sep 2025

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Whole genome-based reclassification of several species of the genus Nonomuraea

Noureddine Bouras, Imen Nouioui, Guendouz Dif, Fawzia Chaabane Chaouch, Sherif S. Ebada

published 01 Jul 2025

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Exploring soil bacterial and fungal communities in Colombian terrestrial ecosystems modulated by altitude-influenced factors

Wendy Lorena Reyes-Ardila, Glever Alexander Vélez-Martínez, Juan Diego Duque-Zapata, Paula Andrea Rugeles-Silva, Jaime Eduardo Muñoz Flórez, Diana López-Álvarez

published 12 Dec 2024

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Environmental predictors impact microbial-based postmortem interval (PMI) estimation models within human decomposition soils

Allison R. Mason, Hayden S. McKee-Zech, Dawnie W. Steadman, Jennifer M. DeBruyn

published 11 Oct 2024

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A search for bacteria identified from cerebrospinal fluid shunt infections in previous surgical events

Paul Hodor, Christopher E. Pope, Kathryn B. Whitlock, Patrick J. McDonald, Jason Hauptman, Lucas R. Hoffman, David D. Limbrick Jr., Tamara D. Simon, on behalf of the Cerebrospinal FLuId MicroBiota in Shunts (CLIMB) Study Group

published 10 Oct 2024

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Bacterial diversity of cantaloupes and soil from Arizona and California commercial fields at the point of harvest

Madison Goforth, Victoria Obergh, Richard Park, Martin Porchas, Paul Brierley, Tom Turni, Bhimanagouda Patil, Sadhana Ravishankar, Steven Huynh, Craig T. Parker, Kerry K. Cooper

published 26 Sep 2024

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Gut microbiome in the Graves’ disease: Comparison before and after anti-thyroid drug treatment

Chaiho Jeong, Hansang Baek, Jaewoong Bae, Nakwon Hwang, Jeonghoon Ha, Young-Seok Cho, Dong-Jun Lim

published 31 May 2024

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Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Detection of pathogenic bacteria in ticks from Isiolo and Kwale counties of Kenya using metagenomics

Bryson Brian Kimemia, Lillian Musila, Solomon Langat, Erick Odoyo, Stephanie Cinkovich, David Abuom, Santos Yalwala, Samoel Khamadi, Jaree Johnson, Eric Garges, Elly Ojwang, Fredrick Eyase

published 30 Apr 2024

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Exploring the interplay between the core microbiota, physicochemical factors, agrobiochemical cycles in the soil of the historic tokaj mád wine region

Judit Remenyik, László Csige, Péter Dávid, Péter Fauszt, Anna Anita Szilágyi-Rácz, Erzsébet Szőllősi, Zsófia Réka Bacsó, István Szepsy Jnr, Krisztina Molnár, Csaba Rácz, Gábor Fidler, Zoltán Kállai, László Stündl, Attila Csaba Dobos, Melinda Paholcsek

published 16 Apr 2024

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Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States

Madison Goforth, Victoria Obergh, Richard Park, Martin Porchas, Kevin M. Crosby, John L. Jifon, Sadhana Ravishankar, Paul Brierley, Daniel L. Leskovar, Thomas A. Turini, Jonathan Schultheis, Timothy Coolong, Rhonda Miller, Hisashi Koiwa, Bhimanagouda S. Patil, Margarethe A. Cooper, Steven Huynh, Craig T. Parker, Wenjing Guan, Kerry K. Cooper

published 11 Apr 2024

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Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions

Rachel C. Harbeitner, Fabian Wittmers, Charmaine C. M. Yung, Charlotte A. Eckmann, Elisabeth Hehenberger, Marguerite Blum, David M. Needham, Alexandra Z. Worden

published 02 Apr 2024

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Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, Agnieszka Klonowska, Kadidia Koïta, Lionel Moulin

published 06 Apr 2023

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