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Bacterial genomics

The quantitative impact of read mapping to non-native reference genomes in comparative RNA-Seq studies

Adam Price, Cynthia Gibas

Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics

Francesca Rovetto, Aurélien Carlier, [ ... ], Kurt Houf

Hopping into a hot seat: Role of DNA structural features on IS5-mediated gene activation and inactivation under stress

M. Zafri Humayun, Zhongge Zhang, [ ... ], Milton H. Saier Jr.

The whole set of the constitutive promoters recognized by four minor sigma subunits of Escherichia coli RNA polymerase

Tomohiro Shimada, Kan Tanaka, Akira Ishihama

A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials

Camilo Gómez-Garzón, Alejandra Hernández-Santana, Jenny Dussán

Analysis of ParB-centromere interactions by multiplex SPR imaging reveals specific patterns for binding ParB in six centromeres of Burkholderiales chromosomes and plasmids

Flavien Pillet, Fanny Marie Passot, [ ... ], Jean-Yves Bouet

The genetic diversity of commensal Escherichia coli strains isolated from non-antimicrobial treated pigs varies according to age group

Shahana Ahmed, John E. Olsen, Ana Herrero-Fresno

Genome Partitioner: A web tool for multi-level partitioning of large-scale DNA constructs for synthetic biology applications

Matthias Christen, Luca Del Medico, Heinz Christen, Beat Christen

Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage

Tangjian Peng, Liyuan Ma, [ ... ], Weimin Zeng

Whole genome re-sequencing to identify suppressor mutations of mutant and foreign Escherichia coli FtsZ

Kiani A. J. Arkus Gardner, Masaki Osawa, Harold P. Erickson

An in silico pan-genomic probe for the molecular traits behind Lactobacillus ruminis gut autochthony

Ravi Kant, Airi Palva, Ingemar von Ossowski

Genomic analyses of the ancestral Manila family of Mycobacterium tuberculosis

Xuehua Wan, Kent Koster, [ ... ], James T. Douglas

Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater

William B. Ludington, Thaddeus D. Seher, [ ... ], Joseph L. DeRisi

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