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Bacterial genomics

An electroporation-free method based on Red recombineering for markerless deletion and genomic replacement in the Escherichia coli DH1 genome

Yanlong Wei, Pingping Deng, [ ... ], Hongqing Fang

Prohibition of antibiotic growth promoters has affected the genomic profiles of Lactobacillus salivarius inhabiting the swine intestine

Jun-Yeong Lee, Geon Goo Han, [ ... ], Yun-Jaie Choi

Mode of action of plectasin-derived peptides against gas gangrene-associated Clostridium perfringens type A

Xueling Zheng, Xiumin Wang, [ ... ], Jianhua Wang

Microgravity validation of a novel system for RNA isolation and multiplex quantitative real time PCR analysis of gene expression on the International Space Station

Macarena Parra, Jimmy Jung, [ ... ], Eduardo A. C. Almeida

Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species

Takayasu Watanabe, Masaki Shibasaki, [ ... ], Ichiro Nakagawa

In silico analysis of protein toxin and bacteriocins from Lactobacillus paracasei SD1 genome and available online databases

Komwit Surachat, Unitsa Sangket, Panchalika Deachamag, Wilaiwan Chotigeat

Genetic diversity of the O antigens of Proteus species and the development of a suspension array for molecular serotyping

Xiang Yu, Agnieszka Torzewska, [ ... ], Lei Wang

The nucleoid protein Dps binds genomic DNA of Escherichia coli in a non-random manner

S. S. Antipov, M. N. Tutukina, [ ... ], O. N. Ozoline

Whole genome sequence of two Rathayibacter toxicus strains reveals a tunicamycin biosynthetic cluster similar to Streptomyces chartreusis

Aaron J. Sechler, Matthew A. Tancos, [ ... ], Elizabeth E. Rogers

metaSNV: A tool for metagenomic strain level analysis

Paul Igor Costea, Robin Munch, [ ... ], Peer Bork

Investigation of horizontal gene transfer of pathogenicity islands in Escherichia coli using next-generation sequencing

Maxim Messerer, Wolfgang Fischer, Sören Schubert

Oligo- and dsDNA-mediated genome editing using a tetA dual selection system in Escherichia coli

Young Shin Ryu, Sathesh-Prabu Chandran, Kyungchul Kim, Sung Kuk Lee

The quantitative impact of read mapping to non-native reference genomes in comparative RNA-Seq studies

Adam Price, Cynthia Gibas

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