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Bacterial genomics

Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination

Ayon Pal, Barnan Kumar Saha, Jayanti Saha

Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis

David Lynch, Paula M. O’Connor, [ ... ], Máire Begley

Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts

Molly C. Bletz, Boyke Bunk, [ ... ], Miguel Vences

ProphET, prophage estimation tool: A stand-alone prophage sequence prediction tool with self-updating reference database

João L. Reis-Cunha, Daniella C. Bartholomeu, [ ... ], Gustavo C. Cerqueira

The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity

Mouna Mahjoubi, Habibu Aliyu, [ ... ], Ameur Cherif

gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output

Juhana I. Kammonen, Olli-Pekka Smolander, [ ... ], Petri Auvinen

Comparative genomics of Aeromonas veronii: Identification of a pathotype impacting aquaculture globally

Hasan C. Tekedar, Salih Kumru, [ ... ], Mark L. Lawrence

Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population

Matej Bezdicek, Marketa Nykrynova, [ ... ], Martina Lengerova

Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli

Narjol González-Escalona, Marc A. Allard, [ ... ], Maria Hoffmann

Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants

Jerson Garita-Cambronero, Marta Sena-Vélez, [ ... ], Jaime Cubero

DNA segregation under Par protein control

Lavisha Jindal, Eldon Emberly

Optimized detection of bacteria in bloodstream infections

Yajing Song, Peter Gyarmati

Development of a robust, field-deployable loop-mediated isothermal amplification (LAMP) assay for specific detection of potato pathogen Dickeya dianthicola targeting a unique genomic region

Jordie Ocenar, Dario Arizala, [ ... ], Mohammad Arif

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