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Bacterial genomics

MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing

William S. Taylor, John Pearson, [ ... ], Rachel V. Purcell

Isolation of a novel species in the genus Cupriavidus from a patient with sepsis using whole genome sequencing

Oh Joo Kweon, Yong Kwan Lim, [ ... ], Mi-Kyung Lee

Identification and characterization of a novel extracellular polyhydroxyalkanoate depolymerase in the complete genome sequence of Undibacterium sp. KW1 and YM2 strains

Tomohiro Morohoshi, Taishiro Oi, Tomohiro Suzuki, Shunsuke Sato

A qPCR assay for Bordetella pertussis cells that enumerates both live and dead bacteria

Stacy Ramkissoon, Iain MacArthur, [ ... ], Andrew Preston

Ectoine degradation pathway in halotolerant methylotrophs

Aleksander S. Reshetnikov, Olga N. Rozova, [ ... ], Ildar I. Mustakhimov

A diagnostic real-time PCR assay for the rapid identification of the tomato-potato psyllid, Bactericera cockerelli (Šulc, 1909) and development of a psyllid barcoding database

J. C. Sumner-Kalkun, M. J. Sjölund, [ ... ], D. M. Kenyon

Genome-based species-specific primers for rapid identification of six species of Lactobacillus acidophilus group using multiplex PCR

Inhwan You, Eun Bae Kim

First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections

Naveen Kumar Devanga Ragupathi, Balaji Veeraraghavan, [ ... ], Ankur Mutreja

Phylogenetic analysis reveals an ancient gene duplication as the origin of the MdtABC efflux pump

Kamil Górecki, Megan M. McEvoy

The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

Sophie Röhling, Alexander Linne, [ ... ], Burkhard Morgenstern

Recombination and gene loss occur simultaneously during bacterial horizontal gene transfer

Bert Ely

Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses

Youn Wook Chung, Ho-Jin Gwak, [ ... ], Ji-Hwan Ryu

The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains

Rafael Hernandez-Guerrero, Edgardo Galán-Vásquez, Ernesto Pérez-Rueda

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