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Algorithms

On Evaluating MHC-II Binding Peptide Prediction Methods

Yasser EL-Manzalawy, Drena Dobbs, Vasant Honavar

Simplivariate Models: Ideas and First Examples

Jos A. Hageman, Margriet M. W. B. Hendriks, [ ... ], Age K. Smilde

A Seriation Approach for Visualization-Driven Discovery of Co-Expression Patterns in Serial Analysis of Gene Expression (SAGE) Data

Olena Morozova, Vyacheslav Morozov, [ ... ], Marco A. Marra

Identification of a 5-Protein Biomarker Molecular Signature for Predicting Alzheimer's Disease

Martín Gómez Ravetti, Pablo Moscato

Superposition of Transcriptional Behaviors Determines Gene State

Sol Efroni, Liran Carmel, Carl G. Schaefer, Kenneth H. Buetow

Mathematical Analysis of Copy Number Variation in a DNA Sample Using Digital PCR on a Nanofluidic Device

Simant Dube, Jian Qin, Ramesh Ramakrishnan

Genome Holography: Deciphering Function-Form Motifs from Gene Expression Data

Asaf Madi, Yonatan Friedman, [ ... ], Eshel Ben Jacob

Probing the Dynamics of Identified Neurons with a Data-Driven Modeling Approach

Thomas Nowotny, Rafael Levi, Allen I. Selverston

Automated Identification of Acute Hepatitis B Using Electronic Medical Record Data to Facilitate Public Health Surveillance

Michael Klompas, Gillian Haney, [ ... ], Richard Platt

Visualizing Global Properties of Large Complex Networks

Weijiang Li, Hiroyuki Kurata

Gating at the Mouth of the Acetylcholine Receptor Channel: Energetic Consequences of Mutations in the αM2-Cap

Pallavi A. Bafna, Prasad G. Purohit, Anthony Auerbach

Complex Cooperative Networks from Evolutionary Preferential Attachment

Julia Poncela, Jesús Gómez-Gardeñes, [ ... ], Yamir Moreno

Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data

Roy Varshavsky, David Horn, Michal Linial

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