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Algorithms

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

Melissa K. Friswell, Helen Gika, Ian J. Stratford, Georgios Theodoridis, Brian Telfer, Ian D. Wilson, Andrew J. McBain

published 05 Jan 2010

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Parameter Identifiability and Redundancy in a General Class of Stochastic Carcinogenesis Models

Mark P. Little, Wolfgang F. Heidenreich, Guangquan Li

published 31 Dec 2009

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AutoEPG: Software for the Analysis of Electrical Activity in the Microcircuit Underpinning Feeding Behaviour of Caenorhabditis elegans

James Dillon, Ioannis Andrianakis, Kate Bull, Steve Glautier, Vincent O'Connor, Lindy Holden-Dye, Christopher James

published 29 Dec 2009

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Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

published 22 Dec 2009

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Vector Field Embryogeny

Till Steiner, Yaochu Jin, Bernhard Sendhoff

published 17 Dec 2009

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A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies

Patrick D. Schloss

published 14 Dec 2009

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Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models

Xiaoning Qian, Byung-Jun Yoon

published 07 Dec 2009

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Generating Triangulated Macromolecular Surfaces by Euclidean Distance Transform

Dong Xu, Yang Zhang

published 02 Dec 2009

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Scalable Steady State Analysis of Boolean Biological Regulatory Networks

Ferhat Ay, Fei Xu, Tamer Kahveci

published 01 Dec 2009

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Estimation of Immune Cell Densities in Immune Cell Conglomerates: An Approach for High-Throughput Quantification

Niels Halama, Inka Zoernig, Anna Spille, Kathi Westphal, Peter Schirmacher, Dirk Jaeger, Niels Grabe

published 16 Nov 2009

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BFAST: An Alignment Tool for Large Scale Genome Resequencing

Nils Homer, Barry Merriman, Stanley F. Nelson

published 11 Nov 2009

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A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants

Alberto Riva, Graziano Pesole

published 28 Oct 2009

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Lacunarity Analysis: A Promising Method for the Automated Assessment of Melanocytic Naevi and Melanoma

Stephen Gilmore, Rainer Hofmann-Wellenhof, Jim Muir, H. Peter Soyer

published 13 Oct 2009

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