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Algorithms

Optimal In Silico Target Gene Deletion through Nonlinear Programming for Genetic Engineering

Chung-Chien Hong, Mingzhou Song

published 24 Feb 2010

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Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data

Yiannis A. I. Kourmpetis, Aalt D. J. van Dijk, Marco C. A. M. Bink, Roeland C. H. J. van Ham, Cajo J. F. ter Braak

published 24 Feb 2010

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Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

Mika Gustafsson, Michael Hörnquist

published 16 Feb 2010

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A Top-Performing Algorithm for the DREAM3 Gene Expression Prediction Challenge

Jianhua Ruan

published 04 Feb 2010

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The Effect of Orthology and Coregulation on Detecting Regulatory Motifs

Valerie Storms, Marleen Claeys, Aminael Sanchez, Bart De Moor, Annemieke Verstuyf, Kathleen Marchal

published 03 Feb 2010

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Mapping Change in Large Networks

Martin Rosvall, Carl T. Bergstrom

published 27 Jan 2010

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Regulation of Gene Expression by PI3K in Mouse Growth Plate Chondrocytes

Veronica Ulici, Claudine G. James, Katie D. Hoenselaar, Frank Beier

published 25 Jan 2010

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An Iterative Approach for Generating Statistically Realistic Populations of Households

Floriana Gargiulo, Sônia Ternes, Sylvie Huet, Guillaume Deffuant

published 22 Jan 2010

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Molecular Interaction Studies of Trimethoxy Flavone with Human Serum Albumin

Mahesh Gokara, Babu Sudhamalla, Damu G. Amooru, Rajagopal Subramanyam

published 21 Jan 2010

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A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

Minli Xu, Zhengchang Su

published 20 Jan 2010

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Dermatoglyphics from All Chinese Ethnic Groups Reveal Geographic Patterning

Hai-Guo Zhang, Yao-Fong Chen, Ming Ding, Li Jin, D. Troy Case, Yun-Ping Jiao, Xian-Ping Wang, Chong-Xian Bai, Gang Jin, Jiang-Ming Yang, Han Wang, Jian-Bing Yuan, Wei Huang, Zhu-Gang Wang, Ren-Biao Chen

published 20 Jan 2010

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Dynamic Networks from Hierarchical Bayesian Graph Clustering

Yongjin Park, Cristopher Moore, Joel S. Bader

published 11 Jan 2010

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Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems

Sagar Indurkhya, Jacob Beal

published 06 Jan 2010

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