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Algorithms

Optimal In Silico Target Gene Deletion through Nonlinear Programming for Genetic Engineering

Chung-Chien Hong, Mingzhou Song

Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data

Yiannis A. I. Kourmpetis, Aalt D. J. van Dijk, [ ... ], Cajo J. F. ter Braak

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

Mika Gustafsson, Michael Hörnquist

A Top-Performing Algorithm for the DREAM3 Gene Expression Prediction Challenge

Jianhua Ruan

The Effect of Orthology and Coregulation on Detecting Regulatory Motifs

Valerie Storms, Marleen Claeys, [ ... ], Kathleen Marchal

Mapping Change in Large Networks

Martin Rosvall, Carl T. Bergstrom

Regulation of Gene Expression by PI3K in Mouse Growth Plate Chondrocytes

Veronica Ulici, Claudine G. James, Katie D. Hoenselaar, Frank Beier

An Iterative Approach for Generating Statistically Realistic Populations of Households

Floriana Gargiulo, Sônia Ternes, Sylvie Huet, Guillaume Deffuant

Molecular Interaction Studies of Trimethoxy Flavone with Human Serum Albumin

Mahesh Gokara, Babu Sudhamalla, Damu G. Amooru, Rajagopal Subramanyam

A Novel Alignment-Free Method for Comparing Transcription Factor Binding Site Motifs

Minli Xu, Zhengchang Su

Dermatoglyphics from All Chinese Ethnic Groups Reveal Geographic Patterning

Hai-Guo Zhang, Yao-Fong Chen, [ ... ], Ren-Biao Chen

Dynamic Networks from Hierarchical Bayesian Graph Clustering

Yongjin Park, Cristopher Moore, Joel S. Bader

Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems

Sagar Indurkhya, Jacob Beal

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