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Algorithms

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

Vân Anh Huynh-Thu, Alexandre Irrthum, Louis Wehenkel, Pierre Geurts

published 28 Sep 2010

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Murasaki: A Fast, Parallelizable Algorithm to Find Anchors from Multiple Genomes

Kris Popendorf, Hachiya Tsuyoshi, Yasunori Osana, Yasubumi Sakakibara

published 24 Sep 2010

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Linear Control Theory for Gene Network Modeling

Yong-Jun Shin, Leonidas Bleris

published 16 Sep 2010

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Systematic Characterizations of Text Similarity in Full Text Biomedical Publications

Zhaohui Sun, Mounir Errami, Tara Long, Chris Renard, Nishant Choradia, Harold Garner

published 15 Sep 2010

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Diffusion Model Based Spectral Clustering for Protein-Protein Interaction Networks

Kentaro Inoue, Weijiang Li, Hiroyuki Kurata

published 07 Sep 2010

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Community Landscapes: An Integrative Approach to Determine Overlapping Network Module Hierarchy, Identify Key Nodes and Predict Network Dynamics

István A. Kovács, Robin Palotai, Máté S. Szalay, Peter Csermely

published 02 Sep 2010

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Prediction of Nucleosome Positioning Based on Transcription Factor Binding Sites

Xianfu Yi, Yu-Dong Cai, Zhisong He, WeiRen Cui, Xiangyin Kong

published 01 Sep 2010

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A Novel Preprocessing Method Using Hilbert Huang Transform for MALDI-TOF and SELDI-TOF Mass Spectrometry Data

Li-Ching Wu, Hsin-Hao Chen, Jorng-Tzong Horng, Chen Lin, Norden E. Huang, Yu-Che Cheng, Kuang-Fu Cheng

published 31 Aug 2010

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Optimizing Combination Therapies with Existing and Future CML Drugs

Allen A. Katouli, Natalia L. Komarova

published 23 Aug 2010

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Partitioning of Minimotifs Based on Function with Improved Prediction Accuracy

Sanguthevar Rajasekaran, Tian Mi, Jerlin Camilus Merlin, Aaron Oommen, Patrick Gradie, Martin R. Schiller

published 19 Aug 2010

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Inferring Geographic Coordinates of Origin for Europeans Using Small Panels of Ancestry Informative Markers

Petros Drineas, Jamey Lewis, Peristera Paschou

published 18 Aug 2010

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Accumulative Difference Image Protocol for Particle Tracking in Fluorescence Microscopy Tested in Mouse Lymphonodes

Carlo E. Villa, Michele Caccia, Laura Sironi, Laura D'Alfonso, Maddalena Collini, Ilaria Rivolta, Giuseppe Miserocchi, Tatiana Gorletta, Ivan Zanoni, Francesca Granucci, Giuseppe Chirico

published 17 Aug 2010

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A New Measure of Centrality for Brain Networks

Karen E. Joyce, Paul J. Laurienti, Jonathan H. Burdette, Satoru Hayasaka

published 16 Aug 2010

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