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Algorithms

Accurate and Robust Prediction of Genetic Relationship from Whole-Genome Sequences

Hong Li, Gustavo Glusman, [ ... ], Jared C. Roach

Inferring Regulatory Networks by Combining Perturbation Screens and Steady State Gene Expression Profiles

Ali Shojaie, Alexandra Jauhiainen, Michael Kallitsis, George Michailidis

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, [ ... ], Ralf Mikut

Stability Indicators in Network Reconstruction

Michele Filosi, Roberto Visintainer, [ ... ], Cesare Furlanello

Dynamic Positron Emission Tomography Image Restoration via a Kinetics-Induced Bilateral Filter

Zhaoying Bian, Jing Huang, [ ... ], Wufan Chen

Transportation Network with Fluctuating Input/Output Designed by the Bio-Inspired Physarum Algorithm

Shin Watanabe, Atsuko Takamatsu

Game Theory and Extremal Optimization for Community Detection in Complex Dynamic Networks

Rodica Ioana Lung, Camelia Chira, Anca Andreica

QuickProbs—A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudyś, Sebastian Deorowicz

A Semi-Automated Pipeline for the Segmentation of Rhesus Macaque Hippocampus: Validation across a Wide Age Range

Michael R. Hunsaker, David G. Amaral

Evidence That HIV-1 CRF01_AE Is Associated with Low CD4+T Cell Count and CXCR4 Co-Receptor Usage in Recently Infected Young Men Who Have Sex with Men (MSM) in Shanghai, China

Xiaoshan Li, Yile Xue, [ ... ], Ping Zhong

Love Thy Neighbour: Automatic Animal Behavioural Classification of Acceleration Data Using the K-Nearest Neighbour Algorithm

Owen R. Bidder, Hamish A. Campbell, [ ... ], Rory P. Wilson

Energy Parameters and Novel Algorithms for an Extended Nearest Neighbor Energy Model of RNA

Ivan Dotu, Vinodh Mechery, Peter Clote

Single Stock Dynamics on High-Frequency Data: From a Compressed Coding Perspective

Hsieh Fushing, Shu-Chun Chen, Chii-Ruey Hwang

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