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Algorithms

PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information

Hao Wu, Hongkai Ji

Fast and Accurate Fitting and Filtering of Noisy Exponentials in Legendre Space

Guobin Bao, Detlev Schild

An Active Learning Approach for Rapid Characterization of Endothelial Cells in Human Tumors

Raghav K. Padmanabhan, Vinay H. Somasundar, [ ... ], William M. F. Lee

Assessment of Network Inference Methods: How to Cope with an Underdetermined Problem

Caroline Siegenthaler, Rudiyanto Gunawan

Feature Selection for Chemical Sensor Arrays Using Mutual Information

X. Rosalind Wang, Joseph T. Lizier, [ ... ], Stephen C. Trowell

Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life

Anne E. Thessen, Cynthia Sims Parr

A Data-Driven Algorithm Integrating Clinical and Laboratory Features for the Diagnosis and Prognosis of Necrotizing Enterocolitis

Jun Ji, Xuefeng B. Ling, [ ... ], Karl G. Sylvester

Accurate and Robust Prediction of Genetic Relationship from Whole-Genome Sequences

Hong Li, Gustavo Glusman, [ ... ], Jared C. Roach

Inferring Regulatory Networks by Combining Perturbation Screens and Steady State Gene Expression Profiles

Ali Shojaie, Alexandra Jauhiainen, Michael Kallitsis, George Michailidis

Fast Segmentation of Stained Nuclei in Terabyte-Scale, Time Resolved 3D Microscopy Image Stacks

Johannes Stegmaier, Jens C. Otte, [ ... ], Ralf Mikut

Stability Indicators in Network Reconstruction

Michele Filosi, Roberto Visintainer, [ ... ], Cesare Furlanello

Dynamic Positron Emission Tomography Image Restoration via a Kinetics-Induced Bilateral Filter

Zhaoying Bian, Jing Huang, [ ... ], Wufan Chen

Transportation Network with Fluctuating Input/Output Designed by the Bio-Inspired Physarum Algorithm

Shin Watanabe, Atsuko Takamatsu

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