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Bioinformatics

First Transcriptome of the Testis-Vas Deferens-Male Accessory Gland and Proteome of the Spermatophore from Dermacentor variabilis (Acari: Ixodidae)

Daniel E. Sonenshine, Brooke W. Bissinger, [ ... ], R. Michael Roe

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel J. P. Douzery

Tidying Up International Nucleotide Sequence Databases: Ecological, Geographical and Sequence Quality Annotation of ITS Sequences of Mycorrhizal Fungi

Leho Tedersoo, Kessy Abarenkov, [ ... ], Urmas Kõljalg

The Human N-Alpha-Acetyltransferase 40 (hNaa40p/hNatD) Is Conserved from Yeast and N-Terminally Acetylates Histones H2A and H4

Kristine Hole, Petra Van Damme, [ ... ], Thomas Arnesen

Analysis of the Complete Open Reading Frame of Genotype 2b Hepatitis C Virus in Association with the Response to Peginterferon and Ribavirin Therapy

Makoto Kadokura, Shinya Maekawa, [ ... ], Nobuyuki Enomoto

Comparative Analysis of Serine/Arginine-Rich Proteins across 27 Eukaryotes: Insights into Sub-Family Classification and Extent of Alternative Splicing

Dale N. Richardson, Mark F. Rogers, [ ... ], Anireddy S. N. Reddy

A Phylometagenomic Exploration of Oceanic Alphaproteobacteria Reveals Mitochondrial Relatives Unrelated to the SAR11 Clade

Björn Brindefalk, Thijs J. G. Ettema, [ ... ], Siv G. E. Andersson

CDinFusion – Submission-Ready, On-Line Integration of Sequence and Contextual Data

Wolfgang Hankeln, Norma Johanna Wendel, [ ... ], Frank Oliver Glöckner

Origination of New Immunological Functions in the Costimulatory Molecule B7-H3: The Role of Exon Duplication in Evolution of the Immune System

Jing Sun, Fengqing Fu, [ ... ], Xueguang Zhang

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

Niamh E. Redmond, Jean Raleigh, [ ... ], Grace P. McCormack

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses

Jiantao Shi, Wentao Yang, [ ... ], Kankan Wang

Determinants, Discriminants, Conserved Residues - A Heuristic Approach to Detection of Functional Divergence in Protein Families

Kavitha Bharatham, Zong Hong Zhang, Ivana Mihalek

High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA

Wenqin Wang, Joachim Messing

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