http://orcid.org/0000-0001-9161-3301
Figures
Abstract
The majority of children and adults with Pompe disease in the population of European descent carry the leaky splicing GAA variant c.-32-13T>G (IVS1) in combination with a fully deleterious GAA variant on the second allele. The phenotypic spectrum of this patient group is exceptionally broad, with symptom onset ranging from early infancy to late adulthood. In addition, the response to enzyme replacement therapy (ERT) varies between patients. The insertion/deletion (I/D) polymorphism of the angiotensin I-converting enzyme (ACE) has been suggested to be a modifier of disease onset and/or response to ERT. Here, we have investigated the effect of the ACE I/D polymorphism in a relatively large cohort of 131 children and adults with Pompe disease, of whom 112 were followed during treatment with ERT for 5 years. We assessed the use of wheelchair and mechanical ventilation, muscle strength assessed via manual muscle testing and hand-held dynamometry (HHD), distance walked on the six-minute walk test (6MWT), forced vital capacity (FVC) in sitting and supine position and daily-life activities assessed by R-PAct. Cross sectional analysis at first visit showed no differences between the genotypes with respect to age at first symptoms, diagnosis, wheelchair use, or ventilator use. Also response to ERT over 5 years assessed by linear mixed model analyses showed no significant differences between ACE groups for any of the outcome measures. The patient cohort contained 24 families with 54 siblings. Differences in ACE genotype could neither explain inter nor intra familial differences. We conclude that the ACE I/D polymorphism does not explain the large variation in disease severity and response to ERT observed among Pompe patients with the same c.-32-13T>G GAA variant.
Citation: Kuperus E, van der Meijden JC, in ’t Groen SLM, Kroos MA, Hoogeveen-Westerveld M, Rizopoulos D, et al. (2018) The ACE I/D polymorphism does not explain heterogeneity of natural course and response to enzyme replacement therapy in Pompe disease. PLoS ONE 13(12): e0208854. https://doi.org/10.1371/journal.pone.0208854
Editor: Cinzia Ciccacci, Tor Vergata University, ITALY
Received: September 12, 2018; Accepted: November 23, 2018; Published: December 7, 2018
Copyright: © 2018 Kuperus et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: Data cannot be shared publicly because of privacy rules concerning patients’ data. Data are available from the Erasmus MC Ethics Committee (e-mail: metc@erasmusmc.nl, phone: +31 10 70 34428, address: Erasmus MC, Dr. Molewaterplein 40, 3015 GD, Rotterdam, Room Ae-337) for researchers who meet the criteria for access to confidential data.
Funding: Research on Pompe disease at Erasmus MC is financially supported by “Prinses Beatrix Spierfonds” [projectnumber W.OR13-21, W.OR15-10, W.OR16-07]; Tex Net; Sophia Foundation for Medical Research (SSWO) [projectnumber S17-32]; Metakids [projectnumber 2016-063]; Conselho Nacional de Desenvolvimento Científico e Tecnológico—“National Counsel of Technological and Scientific Development”, Brasil (PI); and Colciencias. This project has received funding from the Ministry of Economic Affairs under TKI-Allowance under the TKI-programme Life Sciences & Health (project number LSHM16008). The research described here has been funded in part through a collaboration agreement between Erasmus MC and Sanofi Genzyme. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Competing interests: ATvdP has provided consulting services for various industries in the field of Pompe disease (Sanofi Genzyme, Amicus, Spark therapeutics, Pharming, Biomarin, Audentes) under an agreement between these industries and Erasmus MC, Rotterdam, the Netherlands. All the other authors declare no conflict of interest. This does not alter our adherence to PLOS ONE policies on sharing data and materials.
Introduction
Pompe disease (OMIM 232300) is a metabolic myopathy caused by disease-associated variants in the acid α-glucosidase (GAA) gene (OMIM 606800). This results in deficiency of the lysosomal enzyme GAA, leading to an impaired breakdown of glycogen [1]. Clinically, a broad disease spectrum can be observed, ranging from a rapidly progressive classic infantile phenotype to a slower progressing disease course in children and adults. Classic infantile patients present shortly after birth with hypertrophic cardiomyopathy and generalized muscle weakness. Without treatment these patients die within the first year of life due to cardiorespiratory insufficiency [2, 3]. Children and adults present with a slower progressive limb girdle muscle weakness, while cardiac involvement is rare. Most of these patients become wheelchair and ventilator dependent. Survival is reduced compared to the general population [4–6].
The majority of children and adults of European descent with Pompe disease carry the common c.-32-13T>G (IVS1) variant on one GAA allele. The IVS1 variant causes aberrant GAA pre-mRNA splicing by inducing partial or complete skipping of GAA exon 2. A small percentage (10–15%) of leaky wild type splicing occurs [7–12]. The second GAA allele in children and adults with Pompe disease is in many cases a ‘null’ allele, which is defined as an allele that does not generate any detectable GAA enzymatic activity, for example an allele that carries the frequent variant c.525delT [13]. Interestingly, the natural disease course in patients with the IVS1 variant shows an exceptionally broad spectrum: disease onset can vary from early infancy to late adulthood and symptoms can vary. Such differences are even observed among patients with the same IVS1/c.525delT GAA genotype [14–17]. The variation between siblings is less broad, suggesting that disease progression can be modified by genetic background factors [17].
Since 2006, enzyme replacement therapy (ERT) with recombinant human GAA (rhGAA), is available for Pompe disease. In children and adults with Pompe disease ERT has shown to improve muscle function and strength and to stabilize pulmonary function. However, individual responses can vary considerably [18], which is highlighted in our recent study on the clinical response to ERT during 5 year follow up [19]. This is observed irrespective of formation of anti-rhGAA antibodies, suggesting that other factors exist that can modify the response to ERT in this patient group [19–21].
It has been suggested that a polymorphism in the angiotensin converting enzyme (ACE) gene—the insertion (I) or deletion (D) of an alu repeat in intron 16—may affect phenotypic variation and response to ERT in patients with Pompe patients [22–25]. So far, four studies were performed, but the outcomes of the studies were different [22–25]. The DD genotype was associated with an earlier disease onset in some studies [22, 23], but not in another [25], and it was associated with less favorable response to ERT with regard to muscle mass in one study [24], and with regard to FVC and 6MWT in another study [25]. The different outcomes may be explained by small group sizes, an overrepresentation of adult patients, and/or a short follow up of maximum 2 years. This was reason to perform the current nationwide study in a group of 131 children and adults representing the full phenotypic spectrum of patients with the c.-32-13T>G/null gene type. The aim was to further explore the potential influential effect of the ACE polymorphism on age of disease onset, disease severity and outcome of patients when treated with ERT by using a relatively large patient cohort and a longer follow up of 5 years of ERT.
Materials and methods
Patients and study design
This study was part of an ongoing single-center prospective, open-label study, in which all Dutch children and adults with a confirmed diagnosis of Pompe disease—by enzyme analysis in leucocytes or fibroblasts, and by DNA analysis—participated [15, 26–28]. Only patients that carried the c.-32-13 T>G (IVS1) GAA variant on one allele and a fully deleterious (“null”) GAA variant on the other allele were included in this study. Information was collected with respect to onset of symptoms, age of diagnosis and wheelchair- or ventilator dependency. Clinical assessments were performed with 3–6 months intervals. Daily life activities were assessed via the Rasch-built Pompe-specific Activity (R-PAct) scale [29]. Data were collected from January 1, 1999 through January 1, 2016. All data available during this period were used in this analysis. The study was conducted according to the Declaration of Helsinki, the Medical Ethical Committee at Erasmus MC University Medical Center approved the study protocol, and all patients, or their parents or legal guardians, provided written informed consent.
ACE polymorphism
ACE genotyping was performed based on the methods described by Al-Awadhi et al [30]. In short, genomic DNA from blood or fibroblasts was used in a first PCR flanking the alu insertion in intron 16 using the following primers: fw1: 5’-CTGGAGACCACTCCCATCCTTTCT-3’ and rev1: 5’-GATGTGGCCATCACATTCGTCAGAT-3’. PCR was performed using FastStart PCR (Roche) in which 6% DMSO was included in the reaction mixture. Reactions were run on a Bio-rad C1000 Touch Thermal Cycler. When no I allele was found, a second PCR was performed using an alu insertion-specific internal primer fw2: 5’-TGGGATTACAGGCGTGATACAG-3’, which was used in a PCR with the same primer rev1 as above. Positive, negative, and blank controls for the ACE genotype were included in all analyses.
Clinical outcome measures
The use of a wheelchair and mechanical ventilation was registered at each visit. Skeletal muscle strength was assessed using the Medical Research Council (MRC) grading scale and hand-held dynamometry (HHD; Cytec dynamometer, Groningen, The Netherlands) [31–33]. The following muscle groups were tested for either method: neck flexors, shoulder abductors, elbow flexors, elbow extensors, hip flexors, hip abductors, knee flexors, and knee extensors. Additionally, an MRC grade was determined for the hip extensors and hip adductors. This was expressed as percentage of the maximum possible score for MRC sum scores. HHD sum scores were expressed as percentage of the median strength of healthy males and females. Sum scores were calculated if no more than two muscle groups were missing. Muscle function was assessed using the Quick Motor Function Test (QMFT), consisting of 16 motor skills related to daily life [34]. Muscle endurance was assessed using the six-minute walk test (6MWT) in which the distance walked in 6 minutes was recorded [35]. Forced vital capacity (FVC) was measured in upright and supine positions. Results were expressed as percentage of the predicted FVC [36]. The R-PAct scale was used to assess patients’ self-reported ability to perform daily life activities. A score was calculated as described [29], only when all items had been answered. Only adult patients performed this test.
Statistical analysis
Differences in characteristics between the three different ACE genotypes (II, DD and ID) at first visit were calculated as follows. First we tested if any of the ACE groups differed from the others using the Kruskal-Wallis test for numerical data and the chi-square test (2x3) for categorical data. When significant, the Mann-Whitney and chi-square tests (2x2) were used to identify which of the groups (II vs ID, II vs DD or ID vs DD) differed. We corrected for multiple testing using the Holm method [37].
Longitudinal analyses of the effects of ERT were performed using linear mixed effect models to account for repeated measurements per patient as described [19]. Models were fitted for each outcome measure using the nlme package of the statistical program R (version 3.2.5) [38, 39]. Time was expressed as years after start of ERT. To account for potential non-linear profiles we used natural cubic splines in the fixed-effects and random-effects parts of the model. In the specification of the splines, boundary knots were placed at 0 (i.e. start of ERT) and 5 years, and internal knots were placed at 1 and 3.5 years. For the random-effects part of the model an unstructured covariance matrix was used. Likelihood-ratio-tests were used to asses if there was an interaction between time and ACE polymorphism; e.g. if outcome measures progressed differently during treatment for each ACE polymorphism or if the different polymorphisms had different intercepts; e.g. overall disease severity. Obtained p-values were corrected for multiple testing using the Holm method [37]. Plots for the group means were generated for the different outcome measures during 5 years of ERT as described [19]. Siblings from various families were identified. For each sibling the age at first symptoms, diagnosis, the start of ERT, the start of wheelchair/ventilator use, and their last follow-up or death were plotted to study if different ACE genotypes explained variation within families. Siblings were classified as having varying outcomes when an event occurred in one sibling and did not occur within 10 years in the other sibling.
Power analysis
We conducted a post hoc power analysis based on our cross-sectional data using the outcome measure age of onset, as this is highly variable in patients with the same IVS-1/null variants. We assumed that the ACE genotype would fully explain all phenotypical variation between patients. In this scenario, the medians of the three ACE genotype groups (II, ID, and DD) are the same as the 25th, 50th and 75th percentiles of the age of onset of the overall population. We calculated how many subjects are needed to detect a difference between ACE groups at a power of >0.8 by simulating a thousand ‘sample populations’ with the given number of patients, and performing a Kruskal-Wallis test.
Results
Patients
A total of 146 Dutch patients with the IVS1/”null” genotype were known in our center at data closure. DNA was available for 131 patients to determine the ACE genotype (Table 1), of whom 112 had started with ERT. The characteristics of the total patient group (n = 131) were as follows. Gender was evenly distributed (50% females) in the total group and the three different ACE groups (II, DD and ID). Most patients (86%) started ERT at adulthood (>18 years of age). Median ages (in years, with ranges indicated in brackets) at symptom onset, diagnosis, first visit, and start of ERT were 31 (0–62); 38 (0–72); 46 (0–75); and 49 (1–76) years, respectively. Further testing of the age range at start of ERT revealed that these did not differ between the ACE groups. At first visit, 31% of patients used a wheelchair, while the median age at which patients started to use a wheelchair was 49 (11–76) years. For usage of a ventilator, these numbers were 22% and 52 years of age (6–72). The age ranges for all parameters listed above were broad, highlighting the heterogeneity of disease onset and progression of Pompe patients with the IVS1 variant.
Effect of ACE I/D polymorphism at first visit: Cross sectional analysis
The ACE polymorphism genotype was normally distributed within the total patient group (II: 24%; ID: 44%; DD: 31%) (Table 1). Outcomes were compared between the three groups in a cross sectional analysis at first visit (Table 2A) and at start of ERT (Table 2B). This showed that none of the parameters were different between the groups. The use of a wheelchair at first visit was initially found to be different with a p-value of 0.047 with the lowest number of wheelchair users in the DD group, but post-hoc testing showed that this was not significant. Slightly more II patients started ERT during childhood, but the differences between ACE groups were also not significant.
Effect of ACE I/D polymorphism on response to enzyme replacement therapy
A total of 112 patients within the cohort received ERT and were included in longitudinal analysis of 5 years follow-up (Fig 1). We followed the response to ERT by assessment of muscle strength (MRC sumscore, HHD), muscle function (6 minute walking test, QMFT), respiratory function (FVC in sitting and supine positions), and daily life activities (R-Pact scale). The results were analyzed using linear mixed effects models. For some parameters, a difference was observed at the start of ERT between the II and the DD genotype groups, notably for R-Pact scale, QMFT, and FVC in sitting position, with a more favorable value for the II group. However, following multiple testing correction, these differences were not significant. The responses to ERT (i.e. the slopes of the curves during ERT treatment) were not different between the ACE genotype groups for all parameters tested. Individual responses to ERT varied within the ACE genotype groups. We found both good responders and non-responders to ERT in all three ACE genotype groups.
Group means (continuous line) of the outcome measures and 95% prediction interval (area between the dotted lines) obtained for the II, ID and DD genotypes using linear mixed models. P values are indicated in the titles above the graphs.
ACE polymorphisms within families
Our cohort of patients included 54 siblings from 24 different families (2–3 siblings per family). Age at first symptoms, diagnosis, start of wheelchair use, ventilator use, ERT, death (if applicable), and ACE genotype are shown for each patient in Fig 2. Families are ordered by the onset of disease of the youngest family member. In 14 of the 24 families, siblings had discordant ACE polymorphisms, while 10 had the same ACE polymorphism. We found siblings with discordant ACE genotypes but with similar disease courses (8 siblings from 4 families; families 14, 19, 20 and 22), while we also found siblings with the same ACE genotype but very different disease courses (21 siblings from 10 families; families 5, 6, 9, 10, 11, 13, 15, 16, 18 and 24). We conclude that no clear influence of the ACE genotype on onset of disease symptoms can be detected within these families.
Each line represents one patient. Families are numbered and visualized using alternating straight and dotted lines. The ACE genotype of individual patients is indicated at the right side of each patient’s line. Onset of clinical events is plotted on the X axis and indicated with the symbols indicated on the right.
Discussion
Pompe patients with the IVS1 variant represent the largest patient group of European descent with childhood or adult disease onset. These patients have a particularly large variation in phenotype, with symptom onset ranging from 0 to 62 years of age [5, 15, 40]. Pompe patients in general have a variable response to ERT, ranging from good to moderate to non-responders [19, 21, 41]. Here, we investigated the potential contribution of the ACE I/D genotype as a modifier of Pompe disease and response to ERT. Our results indicate that such contribution, if it exists, is too small to explain the phenotypic heterogeneity in this patient group. This applies both to differences in disease severity and to the response to ERT. Analysis of siblings with the same IVS1 genotype also did not point to a contribution of ACE genotype to clinical variation within families. These results are discussed in the light of other reports and with respect to the statistical power needed to identify a genetic modifier for Pompe disease.
A priori, at least two categories of genetic factors can be envisioned as potential modifiers of the disease course in Pompe disease. The first is a modifier of splicing, because the IVS1 variant is a splicing variant. For example, in theory it is possible that polymorphisms in splicing factors affect the amount of leaky wild type splicing by the IVS1 variant. If such polymorphism would exist, it would likely be present in a general splicing factor that is shared between fibroblasts and skeletal muscle cells, because these two cell types show similar aberrant splicing patterns [42]. Another category might be a genetic factor that modifies skeletal muscle function, as skeletal muscle is affected in Pompe disease. The ACE I/D genotype falls in this category, as it has been associated with performance of top athletes. Depending on the type of sport and its requirement for either endurance or strength, groups of top athletes are either enriched in the I or the D ACE alleles, respectively [43–49]. Considering the exceptionally broad clinical phenotype of patients with the IVS1 variant, a strong modifier is expected to explain the large variation in disease severity. Alternatively, modulation of the phenotype may occur via a combination of genetic factors with small effects that, when combined, have a strong effect on muscle function. In this scenario, the ACE polymorphism might be one of multiple factors that, when combined, affect the clinical phenotype.
The first study on the effect of the ACE I/D genotype on the natural course of Pompe patients was published in 2010. This study included 38 patients, 36 of whom contained the IVS1 GAA variant [22]. Sixteen parameters were tested in cross sectional analyses. The results suggested significant differences for some parameters, notably an association between the DD genotype and a worse Walton score (which scores muscle function), an earlier disease onset, more muscle pain, and higher CK levels were found. In 2014, the initial study was extended to 85 patients that contained the IVS1 variant [23]. Associations were found between the DD genotype and pain, but in contrast to the previous study, no associations between ACE genotype and Walton score, CK levels or other clinical parameters were found in cross sectional analyses. Another study was published in 2016, in which 58 patients that had previously been included in the treatment arm of the late onset placebo controlled multicenter enzyme replacement study (LOTS study) were analyzed [25]. In this study, very mildly affected and severely affected patients were excluded. This showed no association between ACE genotype and any parameter including onset of first symptoms, disease duration, 6MWT, or FVC rating disease severity. In the present study, no inclusion criteria were applied other than the presence of the IVS1 variant combined with a null allele and a confirmed diagnosis of Pompe disease. Given the conflicting results published so far, we aimed to test the effect of the ACE genotype in a relatively large patient cohort of 131 patients including both children and adults of various ages and different disease severities. This revealed no significant effects of the ACE genotype on any of the parameters tested. It should be noted that initial statistical analysis suggested some significant differences between different ACE genotype groups, but that these turned into non-significant p-values after multiple testing correction, a method that has not always been applied in previous studies. When we only included adult patients, there were no significant effects of the ACE genotype on any parameter tested (data not shown). Taken together, the initial idea that the ACE DD genotype may be associated with faster symptom onset and more severe muscle symptoms could not be confirmed.
Two previous studies have investigated the influence of the ACE I/D genotype on the response to treatment with ERT. In a study on 16 patients with the IVS1 allele that were treated for > 2 years with ERT, the DD genotype (n = 3) was associated with reduced muscle mass over the course of treatment, while no associations were found for muscle strength, FVC, or 6MWT [24]. In the previously mentioned LOTS study, in which 58 moderately affected patients were treated with ERT for 78 weeks, the DD genotype (n = 17) was associated with a poorer response to ERT of FVC in sitting position [25]. One other parameter was tested, namely the 6MWT, and this showed a better response in patients with the ID genotype and a trend toward a better response in patients with the II genotype compared to the DD genotype. Other parameters for muscle strength and function were not reported in this study. The overall conclusion from the LOTS study was therefore that the II genotype may be associated with a better response to ERT. In the present study, 112 patients were treated with ERT with a follow-up of 5 years after start of ERT, and severely affected patients were also included. Patients with the DD genotype in general did worse compared to the II genotype for several parameters, including 6MWT, QMFT, QMFT, FVC, and R-Pact scale. However, the effects were small and not statistically significant. Altogether, the data available to date do not support the idea that the ACE genotype can explain the heterogeneous response to ERT in juvenile and adult Pompe patients.
The question arises whether we would have been able to detect an effect of the ACE genotype in our patient cohort, given the number of patients tested in relation to the heterogeneity of clinical outcome. To address this, we performed a post-hoc power analysis. We performed the calculation for the hypothetical situation in which the ACE genotype is the only modifying factor that is responsible for phenotypic variation in patients with the IVS1 variant. Although we realize that this may not be the case, the calculation has been performed in this way to give a sense of the number of patients required. As a primary outcome measure, we used symptom onset, because this outcome measure shows a documented large variation among IVS1 patients [17]. In our patient cohort, we calculated that 12 patients would be sufficient to demonstrate a significant effect on natural course (power = 0.96). In this study, we included 131 patients with Pompe disease, arguing that we should have detected an effect of the ACE polymorphism in our cohort if it would exist. We conclude that a possible effect of the ACE I/D genotype on natural course or the clinical response to ERT, if any, is very small, and remains undetected in our patient cohort. The search for modifying factors that can explain phenotypic variation in Pompe disease should continue.
Acknowledgments
We would like to thank the patients (and their parents) for participating in the study and the medical, paramedical and research staff who assisted with the analysis and assessments.
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