Peer Review History

Original SubmissionDecember 18, 2025
Decision Letter - Srinivasa Reddy Bonam, Editor

-->PONE-D-25-64177-->-->Limited efficacy of a therapeutic anti-CD40 monoclonal antibody to inhibit activated CD4 T cell autoimmunity in vitro-->-->PLOS One

Dear Dr. Bart O. Roep,

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Srinivasa Reddy Bonam

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PLOS One

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Reviewer #1: Yes

Reviewer #2: Partly

Reviewer #3: Yes

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Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: No

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Reviewer #2: Yes

Reviewer #3: No

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Reviewer #2: Yes

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Reviewer #1: Introduction with adequate flow, starting with how so many monoclonal antibodies are approved therapies, then zooming into the CD40-CD40L interaction and then finally Iscalimab, a non-depleting anti-CD40 antibody. Previous work had shown that Iscalimab blocks B cell proliferation and TNF production by dendritic cells as expected. Here the authors focus instead on T cells, evaluating the impact of a Iscalimab biosimilar in naïve T cell co-cultures with donor mismatched dendritic cells. However, it is missing a very important piece: mentioning that, just like CD40, CD40L has signaling activity. Clarifying that in the introduction will provide the rationale of the whole study. CD40L on T cells binding to CD40 on B cells and giving them help is very well know, but reverse signaling on T cells by engaging CD40L is not. Please provide a short description of signaling via CD40 and via CD40L and accompanying references in the Introduction. The intracellular part of the CD40 receptor relays signals into the cell after its ligand CD40L binds, activating pathways like NFkB, MAPK, and PI3K to control cell survival, activation, and gene expression, crucial for immunity, especially B-cell function and DC maturation, using TRAF proteins to link to downstream kinases and transcription factors. The CD40L signaling domain involves its short intracellular tail and transmembrane region, allowing for reverse signaling within the T cell itself, activating pathways like ERK and NFκB.

“it is conceivable that that blockade” – repetition of “that” (typo)

Figure 1 – proper controls were used to distinguish between specific binding and non-specific binding. This was important as monocytes and B cells have significant background, whereas dendritic cells and T cells do not.

“as expected, no binding was observed when incubated with T cells”

-The authors should include PMID: 12242444 in the Discussion as a reference that Activated CD4+and CD8+ T cells express CD40

For Figure 3 and Figure 4, the authors should consider including a legend for the colors in the figure itself in addition to the text.

More importantly, Figure 1, Figure 3, and Figure 4 are missing statistics. Figure 1 could compare media fluorescence intensity from replicates to show whether levels of CD40 are statistically significantly different between control and biosimilar staining. Figure 2 statistical significance between red line and blue line, and for Figure 4 statistical significance in difference between blue and red (left) and between blue and yellow (right). Without statistics one cannot claim presence of absence of differences.

In Figure 3 it appears that there’s a difference between red and blue line for the two clones on the right, but not for the two clones on the left. The authors should provide CD40L expression data for the 4 clones in Figure 3, as well as for the T cells used in Figure 4. A simple explanation for the lack of effect of CD40 antagonist would be that the T cells don’t express or express low levels of CD40L and hence would be unaffected from blocking CD40 on antigen presenting cells.

Reviewer #2: 1. Authors need to add justification on why iscalimab biosimilar is being used and not iscalimab innovator product (Code: CFZ533) which is not yet approved by the regulatory authorities.

2. The authors must also explicitly state that iscalimab biosimilar that is used for the study has been characterized with the iscalimab innovator product (Code: CFZ533) in terms of structure and function.

3. The authors must also disclose if the studies mentioned in the article (lines 61 to 65) were performed with iscalimab biosimilar or with innovator product.

4. The authors can discuss in depth the impact of this study on the available clinical trial finding in discussion section as additional paragraph. Since, this study justifies why Iscalimab failed in clinical trials, this justification will help the reader.

5. The authors mention funding from Stichting DON but does not disclose whether Iscalimab biosimilar was gifted or bought from the Abeomics.

6. The authors mention code CFZ-533 for Iscalimab biosimilar which is also given for Novartis Innovator product. The authors need to rectify this statement.

Reviewer #3: The manuscript examines whether a biosimilar of anti‑CD40 (iscalimab) modulates effector and naive CD4+ T-cell proliferation in vitro, confirming B-cell inhibition but finding no effect on T-cell responses. The topic is timely and relevant. However, limitations in design, validation, and reporting make it difficult to draw strong mechanistic conclusions. A substantive revision is required before the work can be considered for publication.

Abstract:

Starting with the abstract, which draws a strong clinical conclusion i.e, “iscalimab is unlikely to offer durable benefit as intervention strategy to treat T cell mediated diseases” based solely on in vitro data. This overinterprets the findings. The conclusions should be toned down and framed as hypothesis-generating, with explicit acknowledgment of the limitations of in vitro systems and the heterogeneous outcomes observed in clinical studies.

Introduction:

The narrative currently relies on clinical trial failures to justify the study and could benefit from a more thorough discussion of alternative explanations (e.g., dosing, pharmacokinetics, patient heterogeneity, disease stage, or tissue targeting). The premise that lack of T-cell inhibition is the main reason for clinical failure is somewhat speculative. Broadening the discussion of CD40 complexity and explicitly acknowledging that clinical inefficacy may result from multiple factors beyond T-cell costimulation would provide valuable context.

Methods:

Antibody concentration: For PBMC and DC staining, 10 µg/mL iscalimab was used, which is a very high concentration. Please justify this choice. Was a titration performed to determine the minimal concentration required for effective staining?

Viability: Did the authors assess cell viability and exclude dead cells during flow cytometry analysis, as it is essential to avoid artifactual results?

Isotype control: Was a proper isotype control antibody of the same class and at the same concentration used to define positive gates and exclude nonspecific binding? Including such controls is crucial for validating specificity.

Secondary antibody: Report the concentration of Mouse‑anti‑Human IgG APC secondary antibody used for staining.

T Cell Models: The study used four long-term cultured, β-cell-specific, autoreactive CD4 T-cell clones. While these are well defined, they represent highly selected, homogeneous effector populations that may not fully reflect the diversity, differentiation states, and costimulatory requirements of T cells in vivo. This selection could influence the detection of CD40 blockade effects and thus the generalisability of the conclusions. Including more physiologically relevant models (e.g., polyclonal or freshly isolated patient T cells) or explicitly acknowledging that this model may underestimate the potential effects of CD40 blockade on other T-cell subsets could further strengthen the study's impact.

B Cell Inhibition: If possible, include comparative controls (e.g., other CD40‑blocking agents) to contextualise potency and specificity.

Statistics: One-sided paired t-test is used without strong justification, which is generally discouraged unless a clear, a priori directional hypothesis is prespecified. The authors should consider using two-sided tests and apply multiple-comparison adjustments where applicable.

Results and Figures:

Figures 1, 3, and 4 lack colour legend entries and should be corrected.

In Figure 1 (monocyte panel), the secondary antibody (mouse-anti-human IgG-APC) shows substantial non-specific binding relative to the no stain control. This should be addressed. Include representative flow plots showing isotype control-based gating and provide the full gating strategy as a supplementary figure.

In Section 3.2 (line 170): The claim of “almost complete inhibition at 0.1 µg/mL” overstates the data in Figure 2 and should be revised for accuracy.

Discussion:

Some aspects of the discussion may benefit from a more balanced interpretation. Conclusions appear to extend beyond what the in vitro data support and may attribute clinical failures primarily to T-cell insensitivity, which remains speculative. The authors should emphasise that the findings are hypothesis generating, clearly distinguish observations from clinical interpretation, and thoughtfully discuss the possible roles of in vivo factors (such as inflammation, tissue niches, and timing) in modulating CD40 dependence and therapeutic outcomes.

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Reviewer #1: No

Reviewer #2: No

Reviewer #3: Yes: Md Jahangir Alam

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Revision 1

Reviewer #1

Introduction with adequate flow, starting with how so many monoclonal antibodies are approved therapies, then zooming into the CD40-CD40L interaction and then finally Iscalimab, a non-depleting anti-CD40 antibody. Previous work had shown that Iscalimab blocks B cell proliferation and TNF production by dendritic cells as expected. Here the authors focus instead on T cells, evaluating the impact of a Iscalimab biosimilar in naïve T cell co-cultures with donor mismatched dendritic cells. However, it is missing a very important piece: mentioning that, just like CD40, CD40L has signaling activity. Clarifying that in the introduction will provide the rationale of the whole study. CD40L on T cells binding to CD40 on B cells and giving them help is very well know, but reverse signaling on T cells by engaging CD40L is not. Please provide a short description of signaling via CD40 and via CD40L and accompanying references in the Introduction. The intracellular part of the CD40 receptor relays signals into the cell after its ligand CD40L binds, activating pathways like NFkB, MAPK, and PI3K to control cell survival, activation, and gene expression, crucial for immunity, especially B-cell function and DC maturation, using TRAF proteins to link to downstream kinases and transcription factors. The CD40L signaling domain involves its short intracellular tail and transmembrane region, allowing for reverse signaling within the T cell itself, activating pathways like ERK and NFκB.

>> We thank the reviewer for this suggestion allowing us to improve our introduction. A short description of signaling via CD40 and CD40L is added to the introduction (page 2).

“The intracellular part of the CD40 receptor signals into antigen presenting cells (APCs) after binding to its ligand, CD40L, activating different members of adapter protein TNF receptor associated factor (TRAF) and pathways such as NFkB, MAPK, and PI3K to control cell survival, activation, and gene expression [3-5]. This is crucial for immunity, especially B cell function and DC maturation [6-8]. The CD40L signaling domain involves a short intracellular tail and transmembrane region, allowing for reverse signaling within T cell, activating pathways such as ERK and NFκB [9-11].”

“it is conceivable that that blockade” – repetition of “that” (typo)

>> Thank you; we corrected this typo.

Figure 1 – proper controls were used to distinguish between specific binding and non-specific binding. This was important as monocytes and B cells have significant background, whereas dendritic cells and T cells do not.

“as expected, no binding was observed when incubated with T cells” -The authors should include PMID: 12242444 in the Discussion as a reference that Activated CD4+and CD8+ T cells express CD40

>>Indeed activated CD4 and CD8 T cells can express CD40. This observation has been added to the discussion (page 10).

“We confirm that an iscalimab biosimilar antibody bound to CD40 expressing cells (DCs, monocytes and B cells). While it has been reported that some activated CD4 and CD8 T cells can express CD40 [32], no binding of the iscalimab biosimilar to T cells was observed in our study, indicating that effects of iscalimab on T cells are likely induced through antigen-presenting cells.”

For Figure 3 and Figure 4, the authors should consider including a legend for the colors in the figure itself in addition to the text.

>> Thank you for this suggestion. We have now included color legends in the figures themselves.

More importantly, Figure 1, Figure 3, and Figure 4 are missing statistics. Figure 1 could compare media fluorescence intensity from replicates to show whether levels of CD40 are statistically significantly different between control and biosimilar staining. Figure 2 statistical significance between red line and blue line, and for Figure 4 statistical significance in difference between blue and red (left) and between blue and yellow (right). Without statistics one cannot claim presence of absence of differences.

>> Thank you for raising this point. We now performed statistical testing for Figures 3 and 4, which is reported in the revised manuscript (page 6). For Figure 1, statistics would seem less relevant, since we intended to report qualitative differences rather than quantitative, between controls (secondary antibody only) and the biosimilar plus secondary antibody; the histograms provide compelling support that indeed iscalimab binds B cells.

“Flow cytometry data was analyzed using FlowJo (version 10.9.0). Statistical significance was tested using GraphPad Prism (version 8.0.2). T cell clones stimulated with (red line) or without (blue line) iscalimab biosimilar were compared, where proliferation rates (raw CPM values) were log-transformed and tested in a two-way ANOVA corrected for multiple comparisons with a Sidak test. Paired student T test (one -sided, expecting reduction) was used to test for inhibition of T cell activation in the presence of iscalimab biosimilar. P value < 0.05 was considered significant.”

In Figure 3 it appears that there’s a difference between red and blue line for the two clones on the right, but not for the two clones on the left. The authors should provide CD40L expression data for the 4 clones in Figure 3, as well as for the T cells used in Figure 4. A simple explanation for the lack of effect of CD40 antagonist would be that the T cells don’t express or express low levels of CD40L and hence would be unaffected from blocking CD40 on antigen presenting cells.

>> We appreciate that providing CD40L expression on our clones would help explaining the lack of effect of CD40 antagonist. We measured CD40L expression on our clones in resting state and after activation (anti-CD3 stimulation). Indeed, the abundance of CD40L expressing cells between T cell clones varied in resting state (6-39%). Yet, after anti-CD3 stimulation the abundance increased in all clones (72-95%), indicating that all clones could be inhibited by iscalimab biosimilar, and implying that any T cell inhibition was unrelated to the rate of their CD40L expression. CD40L expression by our T clones is now reported in the revised manuscript (page 8).

Reviewer #2

1. Authors need to add justification on why iscalimab biosimilar is being used and not iscalimab innovator product (Code: CFZ533) which is not yet approved by the regulatory authorities.

>>The iscalimab innovator product was not available to us.

2. The authors must also explicitly state that iscalimab biosimilar that is used for the study has been characterized with the iscalimab innovator product (Code: CFZ533) in terms of structure and function.

>> Iscalimab biosimilar had been purchased from Abeomics upon their confirmation of its exact sequence identity and resembling all characteristics and functionality of Iscalimab (or CFZ-533).

3. The authors must also disclose if the studies mentioned in the article (lines 61 to 65) were performed with iscalimab biosimilar or with innovator product.

>> The studies cited in our article were performed with iscalimab innovator product.

4. The authors can discuss in depth the impact of this study on the available clinical trial finding in discussion section as additional paragraph. Since, this study justifies why Iscalimab failed in clinical trials, this justification will help the reader.

>> We appreciate that this could be stated more clear. We added a sentence about how our data could explain the limited clinical effect of iscalimab in the revised manuscript (page 12).

“Our data add an alternative explanation why iscalimab showed limited clinical benefit in T cell mediated diseases, where CD40 blockade would be insufficient to offer durable benefit as intervention strategy, as has been shown in clinical trials in transplantation and T1D.”

5. The authors mention funding from Stichting DON but does not disclose whether Iscalimab biosimilar was gifted or bought from the Abeomics.

>> The iscalimab biosimilar used in our study was purchased from Abeomics. We now stated this clearly in the methods section (page 4).

“Iscalimab biosimilar antibody (human IgG anti-CD40, purchased from Abeomics) was used in this study.”

6. The authors mention code CFZ-533 for Iscalimab biosimilar which is also given for Novartis Innovator product. The authors need to rectify this statement.

>> We apologize for this unfortunate glitch and rectified this statement in our revised manuscript.

Reviewer #3

The manuscript examines whether a biosimilar of anti CD40 (iscalimab) modulates effector and naive CD4+ T-cell proliferation in vitro, confirming B-cell inhibition but finding no effect on T-cell responses. The topic is timely and relevant. However, limitations in design, validation, and reporting make it difficult to draw strong mechanistic conclusions. A substantive revision is required before the work can be considered for publication.

Abstract:

Starting with the abstract, which draws a strong clinical conclusion i.e, “iscalimab is unlikely to offer durable benefit as intervention strategy to treat T cell mediated diseases” based solely on in vitro data. This overinterprets the findings. The conclusions should be toned down and framed as hypothesis-generating, with explicit acknowledgment of the limitations of in vitro systems and the heterogeneous outcomes observed in clinical studies.

>> We appreciate that our interpretations of the in vitro data should be toned down into a hypothesis-generating report. We adjusted the abstract (page 1).

“Based on our in vitro data pointing to minimal inhibition of T cells by CD40 blockade, we propose that iscalimab may not suffice to accomplish durable benefit as intervention strategy to treat type 1 diabetes or other T cell mediated diseases.”

Introduction:

The narrative currently relies on clinical trial failures to justify the study and could benefit from a more thorough discussion of alternative explanations (e.g., dosing, pharmacokinetics, patient heterogeneity, disease stage, or tissue targeting). The premise that lack of T-cell inhibition is the main reason for clinical failure is somewhat speculative. Broadening the discussion of CD40 complexity and explicitly acknowledging that clinical inefficacy may result from multiple factors beyond T-cell costimulation would provide valuable context.

>> We agree that alternative factors could also influence the clinical outcomes in the trials besides T cells. We now discuss this in the revised discussion section (page 12).

“The clinical efficacy of iscalimab may be impacted by dosing, pharmacokinetics, patient and disease heterogeneity, disease stage, or affected tissue. Our data add an alternative explanation why iscalimab showed limited clinical benefit in T cell mediated diseases, where CD40 blockade would be insufficient to offer durable benefit as intervention strategy, as has been shown in clinical trials in transplantation and T1D.”

Methods:

Antibody concentration: For PBMC and DC staining, 10 µg/mL iscalimab was used, which is a very high concentration. Please justify this choice. Was a titration performed to determine the minimal concentration required for effective staining?

>> Trough levels of several therapeutic monocloncal antibodies (e.g., rituximab, adalimumab, tocilizumab) are usually around 10µg/ml, whereas intravenous iscalimab reached 848 ug/ml as tough level (PMID 31647605). If anything, the 10µg/mL of iscalimab would be in the low range, but consistent with most therapeutic antibodies. Our previous titration studies on antiCD3 and anti-CD25 in vitro reached complete inhibition of clonal T-cells at 10µg/ml of monoclonal antibodies, for comparison (PMID: 16720206). We state this in the revised manuscript (page 4).

“The concentration (10 µg/ml) was in line with our previous titration studies using anti-CD3 or CD25 to reach complete T-cell inhibition [25], in vitro experiments on B-cell inhibition by iscalimab innovator product by others [19], as well as trough levels in clinical trials assessing rituximab, adalimumab, tocilizumab).”

Viability: Did the authors assess cell viability and exclude dead cells during flow cytometry analysis, as it is essential to avoid artifactual results?

>> Yes indeed, dead cells were excluded from the analyses, which is now stated in the revised manuscript (page 4).

Isotype control: Was a proper isotype control antibody of the same class and at the same concentration used to define positive gates and exclude nonspecific binding? Including such controls is crucial for validating specificity.

>> We agree that controlling for non-specific binding is crucial. To this end, PBMCs and DCs were pre-treated with 50% human serum (corresponding to 4-8mg/ml Ig) to saturate our cultures with all possible Ig, rather than specific isotype control antibody, which should suffice to compete with any non-specific staining using 10µg/ml of anti-CD40.

Secondary antibody: Report the concentration of Mouse anti Human IgG APC secondary antibody used for staining.

>> We apologize for not specifying this; 5µg/ml of Mouse anti Human IgG APC was used for staining with secondary antibody. This has now been specified in the revised manuscript (page 4).

T Cell Models: The study used four long-term cultured, β-cell-specific, autoreactive CD4 T-cell clones. While these are well defined, they represent highly selected, homogeneous effector populations that may not fully reflect the diversity, differentiation states, and costimulatory requirements of T cells in vivo. This selection could influence the detection of CD40 blockade effects and thus the generalisability of the conclusions. Including more physiologically relevant models (e.g., polyclonal or freshly isolated patient T cells) or explicitly acknowledging that this model may underestimate the potential effects of CD40 blockade on other T-cell subsets could further strengthen the study's impact.

>> This is an important point. We agree that testing T cell clones would be a high bar in inhibition experiments. We therefore selected a panel of T cell clones to address a more heterogeneous effector population and also assessed the effect of an iscalimab biosimilar on fully heterogeneous PBL ex vivo to more fully reflect the diversity, differentiation states, and costimulatory requirements of T cells in vivo. No inhibition was observed either PBL or sorted naïve CD4 T-cells (representing a heterogeneous population) in an MLR in the presence of CD40 blockade.

B Cell Inhibition: If possible, include comparative controls (e.g., other CD40 blocking agents) to contextualise potency and specificity.

>> The focus of this report is on iscalimab. B-cells were tested in our studies to confirm that our iscalimab biosimilar showed the expected and desired inhibition of B-cell proliferation as reported before for iscalimab innovator product (CFZ533). We had no intention or reason to compare with other anti-CD40 blocking agents. In our revised manuscript, we added a sentence to leave the possibility that other agents interfering in CD40-CD40L could indeed behave differently than iscalimab, and therefore prove suitable for intervention in T cell mediated diseases (page 12)

Statistics: One-sided paired t-test is used without strong justification, which is generally discouraged unless a clear, a priori directional hypothesis is prespecified. The authors should consider using two-sided tests and apply multiple-comparison adjustments where applicable.

>> Rather than showing a difference (i.e., two-sided), we specifically tested a one-directional affect, namely inhibition. We now stated this a priori justification in our method section describing statistics (page 6).

“Paired student T test (one -sided, expecting reduction) was used to test for inhibition of T cell activation in the presence of iscalimab biosimilar. P value < 0.05 was considered significant.”

Results and Figures

Figures 1, 3, and 4 lack colour legend entries and should be corrected.

>> Agreed. We have now included color legends in the figures themself.

In Figure 1 (monocyte panel), the secondary antibody (mouse-anti-human IgG-APC) shows substantial non-specific binding relative to the no stain control. This should be addres

Attachments
Attachment
Submitted filename: Rebuttal.docx
Decision Letter - Srinivasa Reddy Bonam, Editor

Limited efficacy of a therapeutic anti-CD40 monoclonal antibody to inhibit activated CD4 T cell autoimmunity in vitro

PONE-D-25-64177R1

Dear Dr. Bart O. Roep,

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Kind regards,

Srinivasa Reddy Bonam

Academic Editor

PLOS One

Formally Accepted
Acceptance Letter - Srinivasa Reddy Bonam, Editor

PONE-D-25-64177R1

PLOS One

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PLOS ONE Editorial Office Staff

on behalf of

Dr. Srinivasa Reddy Bonam

Academic Editor

PLOS One

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .