Peer Review History

Original SubmissionJuly 10, 2025
Transfer Alert

This paper was transferred from another journal. As a result, its full editorial history (including decision letters, peer reviews and author responses) may not be present.

Decision Letter - Luisa Maria Diele-Viegas, Editor

Dear Dr. Oceguera-Figueroa,

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Luisa Maria Diele-Viegas, Ph. D.

Academic Editor

PLOS ONE

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[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

Reviewer #1: Yes

Reviewer #2: Yes

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2. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: N/A

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3. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

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4. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: The article entitled “Prevalence, etiology, and transmission of fibropapillomatosis in Olive Ridley turtles at a mass-nesting colony in the Mexican Pacific” is well-written and presents a sound methodology. The study successfully addressed all its objectives, which is essential for a high-quality scientific paper.

My main concern with the manuscript is the use of a pie chart, which could be replaced with a bar chart, for instance, to improve clarity. Additionally, the reference list includes a large number of sources published more than ten years ago and relatively few from the past five years. I recommend that the authors revise the bibliography and consider removing outdated references that are not strictly necessary.

Finally, I congratulate the authors on this valuable contribution to sea turtle conservation.

Reviewer #2: The manuscript is well-written, with an appropriate methodology and a solid discussion. However, some methodological points need to be detailed, and a few parts of the discussion could be improved.

ABSTRACT

The abstract is excellent; it just needs a final concluding sentence to summarize the main finding.

INTRODUCTION

The introduction is a bit long, but I would not change it because it contains a lot of interesting information that helps the reader understand the study's scope. In lines 148 to 153, it would be beneficial to add the prevalence of the disease in the mentioned locations, so the reader can understand whether the prevalence is high or low in this species.

MATERIAL AND METHODS

The Materials and Methods section is good but requires more detail in some parts.

1- In lines 189-192, please cite Table 1, which contains the estimated population size. I felt the absence of this information at this point.

2- Please explain in more detail how the beach was monitored during collections. Was it monitored every day? What times were the collections made? Was the patrol done on foot or with a vehicle (e.g., ATV)? How many people participated in the monitoring?

3- What specific non-toxic paint was used? Were the animals also tagged, or were they only identified with the paint?

4- From what part of the body was the tissue sample obtained (e.g., neck, flipper)?

5- How was the blood collected? Was it during or after nesting? Was an anticoagulant used? In what type of tube was the blood stored after collection?

6- How were the tumors collected? Was the entire tumor collected, or just a piece? Was there a preference for smaller tumors, which the literature suggests have a higher viral load?

7- What is the prevalence of leeches on the turtles? Can you estimate this, or at least indicate if they are commonly found on the turtles or if they are rare? This information would be interesting to the discussion (e.g., viral transmission).

8- Was only one leech collected from each animal, or were more than one collected?

RESULTS

Congratulations on the large sample size of turtles examined. The effort you made is commendable, even with a large population in the area.

1- In lines 320-321, it says 22 tissue samples, with 9 being blood and 14 being tissue (9 + 14 = 23). Please double-check this information.

DISCUSSION

The discussion needs some adjustments.

1- Line 451: What was the sample size of the 1988 study? Including this information is important to understand how many animals were sampled and to be able to confidently state that the prevalence has decreased.

2- Lines 453-455: Was the site monitored before this? It would be good to have information on how long this population has been monitored to be able to state that there were no cases before then.

3- Lines 464-468: The comparison made here is unfair, as it is known that green sea turtles are the most affected species and therefore have the highest prevalence. Additionally, juveniles also have a much higher prevalence than adults. Either remove this part of the discussion or compare it with other nesting areas of the olive ridley turtle. If you don't find many studies on olive ridleys, try comparing them with other species, but from nesting areas, not foraging areas. Only then will you be able to support the information in lines 470-472.

4- Lines 479-480: Are the green sea turtles mentioned here juveniles? If so, it is more relevant to compare them with adults of the same species or, if there are no articles available, with adults of other species.

5- Lines 487-490: Again, are the green sea turtles juveniles? It's always good to make this information clear because it makes a big difference. The discussion would be much better and interesting if it compared between species in nesting areas.

6- Lines 501-502: What are the "other tissues" (2 of 2)?

7- Line 507: There is a typo: "god" standard should be "good" standard.

8- Topic "viral DNA detection in nesting olive ridley females": What do these findings reveal, considering the prevalence of fibropapillomatosis found? Even with a low sample size of tissue from healthy turtles, the prevalence of the virus was high. Could this be related to the environment they live in or the animals' health?

9- Line 536: With which turtle species and in which location was the study conducted that found 90% viral detection in leeches?

10- Could the low viral detection also be related to the small number of leeches sampled?

11- I missed a final concluding paragraph summarizing the main findings.

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Reviewer #1: No

Reviewer #2: Yes:  Camila Miguel

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Revision 1

RESPONSES TO REVIEWERS

Manuscript reference: PONE-D-25-37483

Prevalence, etiology, and transmission of fibropapillomatosis in Olive Ridley turtles at a mass-nesting colony in the Mexican Pacific

Luisa Maria Diele-Viegas, Ph. D.

Academic Editor

PLOS ONE

Please find in this letter our responses to the reviewers’ comments. All changes in the manuscript that correspond to responses to Reviewer # 1 are in green type, those to Reviewer #2 are in red type. Additionally, responses to the Journal requirements are highlighted in purple. If you have any questions, please feel free to contact us for additional explanation.

Journal Requirements:

When submitting your revision, we need you to address these additional requirements.

1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming.

Yes, we verify that our manuscript meets all style and file naming requirements.

2. To comply with PLOS One submissions requirements, in your Methods section, please provide additional information regarding the experiments involving animals and ensure you have included details on (1) methods of sacrifice, (2) methods of anesthesia and/or analgesia, and (3) efforts to alleviate suffering.

Yes, we confirm that our manuscript meets these requirements. In addition to the statements regarding legal permits for sampling activities (Lines 181-185 in the revised version of the manuscript), we included information on the efforts made to minimize discomfort and stress to the individuals, as well the sanitization measures applied to reduce the risk of infection from the tissue sampling (Lines 232-235 in the revised version of the manuscript). In our study, no animals were sacrificed or injured to the degree that required anesthesia or analgesia.

3. Thank you for stating in your Funding Statement: [This project was partially funded by the Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica IN215722 of the Universidad Nacional Autónoma de México (PAPIIT-UNAM). The Dirección General de Asuntos del Personal Académico of the Universidad Nacional Autónoma de México (DGAPA-UNAM) provided financial support to E.L.E. through a postdoctoral fellowship. The Secretaría de Ciencias, Humanidades, Tecnología e Innovación (SECIHTI) supplied a grant scholarship (No. 812903) to K.M.L.T. (No. CVU: 1165342) and financial support through the Investigadoras e Investigadores por México program to V.I.V. (No. project 538).].

Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement.

Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf.

We made changes to the Funding Statement and provided an amended version with the requested details.

4. Thank you for stating the following financial disclosure: [This project was partially funded by the Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica IN215722 of the Universidad Nacional Autónoma de México (PAPIIT-UNAM). The Dirección General de Asuntos del Personal Académico of the Universidad Nacional Autónoma de México (DGAPA-UNAM) provided financial support to E.L.E. through a postdoctoral fellowship. The Secretaría de Ciencias, Humanidades, Tecnología e Innovación (SECIHTI) supplied a grant scholarship (No. 812903) to K.M.L.T. (No. CVU: 1165342) and financial support through the Investigadoras e Investigadores por México program to V.I.V. (No. project 538).].

Please state what role the funders took in the study. If the funders had no role, please state: ""The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.""

If this statement is not correct you must amend it as needed.

Please include this amended Role of Funder statement in your cover letter; we will change the online submission form on your behalf.

We made changes to the Funding Statement and provided an amended version with the requested details.

5. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match.

This project was partially funded by the Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica IN215722 of the Universidad Nacional Autónoma de México (PAPIIT-UNAM). The Dirección General de Asuntos del Personal Académico of the Universidad Nacional Autónoma de México (DGAPA-UNAM) provided financial support to E.L.E. through a postdoctoral fellowship. The Secretaría de Ciencias, Humanidades, Tecnología e Innovación (SECIHTI) supplied a grant scholarship (No. 812903) to K.M.L.T. (No. CVU: 1165342) and financial support through the Investigadoras e Investigadores por México program to V.I.V. (No. project 538).

When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section.

We have made the requested changes

6. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process.

All genetic sequences generated in this study have been deposited in the DNA Data Bank of Japan (DDBJ) under accession numbers LC899718–LC899775 and LC899376–LC899383. These sequences will be publicly available through the DDBJ website within 2 to 7 days from November 4, 2025, once released by DDBJ. The Data Availability Statement in the manuscript has been updated accordingly to reflect this information.

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We require you to either (1) present written permission from the copyright holder to publish these figures specifically under the CC BY 4.0 license, or (2) remove the figures from your submission:

1. You may seek permission from the original copyright holder of Figure 4 to publish the content specifically under the CC BY 4.0 license.

We recommend that you contact the original copyright holder with the Content Permission Form (http://journals.plos.org/plosone/s/file?id=7c09/content-permission-form.pdf) and the following text:

“I request permission for the open-access journal PLOS ONE to publish XXX under the Creative Commons Attribution License (CCAL) CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). Please be aware that this license allows unrestricted use and distribution, even commercially, by third parties. Please reply and provide explicit written permission to publish XXX under a CC BY license and complete the attached form.”

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2. If you are unable to obtain permission from the original copyright holder to publish these figures under the CC BY 4.0 license or if the copyright holder’s requirements are incompatible with the CC BY 4.0 license, please either i) remove the figure or ii) supply a replacement figure that complies with the CC BY 4.0 license. Please check copyright information on all replacement figures and update the figure caption with source information. If applicable, please specify in the figure caption text when a figure is similar but not identical to the original image and is therefore for illustrative purposes only.

The following resources for replacing copyrighted map figures may be helpful:

USGS National Map Viewer (public domain): http://viewer.nationalmap.gov/viewer/

The Gateway to Astronaut Photography of Earth (public domain): http://eol.jsc.nasa.gov/sseop/clickmap/

Maps at the CIA (public domain): https://www.cia.gov/library/publications/the-world-factbook/index.html and https://www.cia.gov/library/publications/cia-maps-publications/index.html

NASA Earth Observatory (public domain): http://earthobservatory.nasa.gov/

Landsat: http://landsat.visibleearth.nasa.gov/

USGS EROS (Earth Resources Observatory and Science (EROS) Center) (public domain): http://eros.usgs.gov/#

Natural Earth (public domain): http://www.naturalearthdata.com/

Figure 4 was created specifically for this study and is therefore not subject to copyright restrictions. The map was produced using QGIS v.3.16 (free and open-source software). The base layer was obtained from OpenStreetMap contributors (available from https://www.openstreetmap.org), licensed under the Open Database License (ODbL; https://www.openstreetmap.org/copyright), and accessed through the FAO Geospatial Platform (https://data.apps.fao.org/). The figure caption now includes proper attribution to OpenStreetMap and clarifies that the data are available under the ODbL license, as well as in Acknowledgments section (Lines 469-471 and 649-6532 in the revised version of the manuscript).

8. If the reviewer comments include a recommendation to cite specific previously published works, please review and evaluate these publications to determine whether they are relevant and should be cited. There is no requirement to cite these works unless the editor has indicated otherwise.

This comment does not apply to our case

9. Please review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the rebuttal letter that accompanies your revised manuscript. If you need to cite a retracted article, indicate the article’s retracted status in the References list and also include a citation and full reference for the retraction notice.

We have thoroughly reviewed the reference list and would like to note the following:

We did not find any retracted articles in our reference list.

We removed outdated references and those not strictly necessary, as suggested by Reviewer #1. As a result, the reference numbers have changed in this revised version of the manuscript.

Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1

The article entitled “Prevalence, etiology, and transmission of fibropapillomatosis in Olive Ridley turtles at a mass-nesting colony in the Mexican Pacific” is well-written and presents a sound methodology. The study successfully addressed all its objectives, which is essential for a high-quality scientific paper.

1. (A) My main concern with the manuscript is the use of a pie chart, which could be replaced with a bar chart, for instance, to improve clarity. (B) Additionally, the reference list includes a large number of sources published more than ten years ago and relatively few from the past five years. I recommend that the authors revise the bibliography and consider removing outdated references that are not strictly necessary.

Comment 1A. We appreciate Reviewer #1 suggestion to replace the pie chart in Figure 4 with a bar chart. Nonetheless, pie charts are widely used to illustrate haplotype composition and genetic variant proportions in population studies. We explored the use of a bar chart for Figure 4, but it was less effective in conveying the data and did not improve interpretability; therefore, we opted to retain the pie chart format.

Comment 1B. We removed outdated references and those not strictly necessary, as suggested. As a result, the reference numbers have changed in this revised version of the manuscript.

Finally, I congratulate the authors on this valuable contribution to sea turtle conservation.

Reviewer #2

The manuscript is well-written, with an appropriate methodology and a solid discussion. However, some methodological points need to be detailed, and a few parts of the discussion could be improved.

ABSTRACT

1. The abstract is excellent; it just needs a final concluding sentence to summarize the main finding.

We have included a final sentence summarizing our key findings (Lines 43-46 in the revised version of the manuscript).

INTRODUCTION

2. The introduction is a bit long, but I would not change it because it contains a lot of interesting information that helps the reader understand the study's scope. In lines 148 to 153, it would be beneficial to add the prevalence of the disease in the mentioned locations, so the reader can understand whether the prevalence is high or low in this species.

We have now included the FP prevalence data corresponding to the nesting beaches mentioned in lines 148–153 original version of MS (Lines 151-156 in the revised version of the manuscript).

MATERIAL AND METHODS

The Materials and Methods section is good but requires more detail in some parts.

3. In lines 189-192, please cite Table 1, which contains the estimated population size. I felt the absence of this information at this point.

In lines 189–192, we clarified that the sampling effort was estimated based on the population size from the three previous nesting seasons (2019–2020, 2020-2021, and 2021-2022), whereas Table 1 presents the estimated female population size per arribada for the nesting season during this study (2022–2023). To fully address the reviewer’s request, we have now included this data in a supplementary table (Table S1, Line 197 in the revised version of the manuscript).

4. Please explain in more detail how the beach was monitored during collections. Was it monitored every day? What times were the collections made? Was the patrol done on foot or with a vehicle (e.g., ATV)? How many people participated in the monitoring?

Night surveys were conducted every day along the nesting beach to detect FP cases in nesting females. Surveys were carried out on foot along the nesting area during the first five nights of each arribada, between 21:00 and 04:00 h. During these nights, we walked approximately 7 km, covering the main nesting zone. However, when nesting activity was concentrated in high-density areas, efforts were focused on those zones. Each survey was conducted by a team of four to five people, most of whom were volunteers. On some nights when volunteers were unavailable, only two or three people partici

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Submitted filename: Labastida_ChAHV5_Response to Reviewers_NOV.docx
Decision Letter - Luisa Maria Diele-Viegas, Editor

Prevalence, etiology, and transmission of fibropapillomatosis in Olive Ridley turtles at a mass-nesting colony in the Mexican Pacific

PONE-D-25-37483R1

Dear Dr. Oceguera-Figueroa,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

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Kind regards,

Luisa Maria Diele-Viegas, Ph. D.

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

Reviewer #1: All comments have been addressed

Reviewer #2: All comments have been addressed

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2. Is the manuscript technically sound, and do the data support the conclusions??>

Reviewer #1: Yes

Reviewer #2: Yes

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3. Has the statistical analysis been performed appropriately and rigorously? -->?>

Reviewer #1: Yes

Reviewer #2: N/A

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4. Have the authors made all data underlying the findings in their manuscript fully available??>

The PLOS Data policy

Reviewer #1: Yes

Reviewer #2: Yes

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5. Is the manuscript presented in an intelligible fashion and written in standard English??>

Reviewer #1: Yes

Reviewer #2: Yes

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Reviewer #1: (No Response)

Reviewer #2: The manuscript was significantly improved after the review round. The authors provided detailed and satisfactory responses, and the modifications implemented completely addressed all concerns from the first assessment. I recommend Acceptance for Publication as it stands.

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Reviewer #1: No

Reviewer #2: Yes:  Camila Miguel

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Formally Accepted
Acceptance Letter - Luisa Maria Diele-Viegas, Editor

PONE-D-25-37483R1

PLOS One

Dear Dr. Oceguera-Figueroa,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS One. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

You will receive an invoice from PLOS for your publication fee after your manuscript has reached the completed accept phase. If you receive an email requesting payment before acceptance or for any other service, this may be a phishing scheme. Learn how to identify phishing emails and protect your accounts at https://explore.plos.org/phishing.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Luisa Maria Diele-Viegas

Academic Editor

PLOS One

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