Peer Review History
| Original SubmissionDecember 25, 2024 |
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PONE-D-24-59779An Improved Robust Algorithms for Fisher Discriminant Model With High Dimensional DataPLOS ONE Dear Dr. duan, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 15 2025 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Thank you for stating in your Funding Statement: This work was supported by the grants from the National Natural Science Foundation (No. 11772002), Ningxia higher education first-class discipline construction funding project (NXYLXK2017B09), Major Special project of North Minzu University (No. ZDZX201902) and Open project of The Key Laboratory of Intelligent Information�Big Data Processing of NingXia Province(No.2019KLBD008) Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 4. 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PLOS requires an ORCID iD for the corresponding author in Editorial Manager on papers submitted after December 6th, 2016. Please ensure that you have an ORCID iD and that it is validated in Editorial Manager. To do this, go to ‘Update my Information’ (in the upper left-hand corner of the main menu), and click on the Fetch/Validate link next to the ORCID field. This will take you to the ORCID site and allow you to create a new iD or authenticate a pre-existing iD in Editorial Manager. 7. Please amend the manuscript submission data (via Edit Submission) to include author Dr. Shaojuan Ma. 8. Please include captions for your Supporting Information files at the end of your manuscript, and update any in-text citations to match accordingly. Please see our Supporting Information guidelines for more information: http://journals.plos.org/plosone/s/supporting-information. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: No ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: This paper, titled "An Improved Robust Algorithms for Fisher Discriminant Model With High Dimensional Data," introduces an advanced approach to Fisher discriminant analysis designed to handle high-dimensional data, particularly those with outliers. By integrating robust algorithms such as MRCD, RegMCD, MCD, OGK, and MVE into the Fisher discriminant framework, the study addresses limitations in traditional methods. Among these, the MRCD-Fisher discriminant is highlighted as the most effective for high-dimensional outlier data. The authors substantiate their findings with empirical and comparative analyses demonstrating the robustness and computational efficiency of the proposed methods. a. The abstract could be more concise by focusing on the core contribution and excluding details like comparative methods until later sections. b. The keywords list is informative but could benefit from correcting "High-dimensianal" to "High-dimensional" for accuracy. c. The introduction provides a solid context for the study; however, the references to applications could be more directly tied to the problem statement to enhance relevance. d. In the literature review, the transition between general robust algorithms and the specific MRCD algorithm could be smoother, offering a clearer connection between the problem and the proposed solution. e. The methodology description should include more details about the parameter tuning and computational aspects of MRCD to facilitate reproducibility and validation. f. The results section could benefit from more explicit quantitative comparisons between MRCD-Fisher discriminant and alternative methods, particularly in terms of robustness and efficiency metrics. g. While the authors highlight the advantages of MRCD-Fisher discriminant, discussing its potential limitations, such as scalability with extremely large datasets, would add balance to the analysis. h. Figures or tables summarizing key experimental findings would greatly enhance the presentation and accessibility of results. i. The conclusion effectively emphasizes the superiority of MRCD-Fisher discriminant but could briefly outline potential future research directions, such as adapting the method for dynamic or streaming data scenarios. k. The Literature citation is not adequate, and the related work to machine learning should be discussed: 1. A Gene selection for microarray data classification via multi-objective graph theoretic-based method Reviewer #2: A robust Fisher discriminant method is proposed to handle high-dimensional data and mitigate the impact of outliers. Several robust algorithms, including MRCD-Fisher, RegMCD-Fisher, MCD-Fisher, OGK-Fisher, and MVE-Fisher discriminants, are integrated into the framework. Comparative experiments demonstrate that the MRCD-Fisher discriminant outperforms others in robustness and effectiveness, particularly when addressing data with outliers, achieving the highest data cleanliness. This makes the MRCD-Fisher model a significant improvement over traditional Fisher discriminant methods for high-dimensional data with outliers. It is crucial for the authors to address some major issues. Please find them below. 1- The overall writing quality requires significant improvement to ensure clarity and coherence. Additionally, certain examples must be presented with greater precision and detail to enhance the reader's understanding. For instance, in Line 27, the reference to Boudt et al. [?] is unclear and needs to be corrected. The citation should be properly formatted, and its context within the text should be clearly articulated to convey its relevance. Providing a brief explanation or summarizing the key findings from the referenced work would further aid the reader in grasping its significance. 2- Merely stating that "The contribution of this paper is to construct the MRCD-Fisher discriminant to improve the traditional Fisher discriminant analysis" is insufficient. The contribution of the work needs to be elaborated on more clearly and explicitly. It is essential to thoroughly highlight the novel aspects of the research, detailing how it advances the state of the art in high-dimensional discriminant analysis. For instance, explaining how the MRCD-Fisher discriminant specifically addresses limitations in traditional Fisher discriminant methods, such as robustness to outliers, would be beneficial. Additionally, providing specific examples or comparisons with existing robust methods could effectively demonstrate the significance and superiority of the proposed approach. A concise summary of the primary achievements, along with a discussion of their broader implications, would further enhance the reader's understanding of the work's impact and relevance in the field. 3- The abstract is not well-written and requires significant improvement to enhance its clarity and coherence. For example, the abbreviations "MRCD-Fisher discriminant," "RegMCD-Fisher discriminant," and "MCD-Fisher discriminant" are used without any explanation of what they stand for. It is essential to define these abbreviations within the abstract to ensure that readers unfamiliar with the terms can understand their meaning. Additionally, the abstract should provide a concise yet comprehensive overview of the study, clearly outlining the problem addressed, the proposed solution, and the key findings, while avoiding ambiguity or unexplained terminology. 4- The methodology section is not adequately informative and lacks sufficient detail. It is essential to present a clear and structured explanation of the methodology, emphasizing the novelty and unique contributions of the current work. This should include a thorough description of the proposed approach, its underlying principles, and how it differs from or improves upon existing methods. Additionally, providing a step-by-step breakdown or a diagram to illustrate the workflow would significantly enhance its clarity and accessibility. To conclude, while the topic discussed in this paper is of considerable interest to readers working with high-dimensional data, the lack of sufficient information and clear structure in the methodology makes it challenging to fully evaluate the work's contributions. As a result, I am unable to make a definitive decision regarding this paper in its current form. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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An Improved Robust Algorithms for Fisher Discriminant Model With High Dimensional Data PONE-D-24-59779R1 Dear Dr. Duan, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Razieh Sheikhpour Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: (No Response) Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: (No Response) Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: The author has adequately addressed the concerns raised by previous reviewers. The paper is well-structured, clearly written, and presents reliable results. It meets the necessary standards for publication Reviewer #2: This is the revised version of the manuscript that was previously submitted by the author(s). After thorough consideration of the changes made in this version, I have concluded that the revisions have addressed the concerns and suggestions raised during the initial review process. The improvements made enhance the overall quality and clarity of the manuscript, making it a valuable contribution to the field. Therefore, I would like to recommend this paper for publication. ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-59779R1 PLOS ONE Dear Dr. Duan, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset You will receive further instructions from the production team, including instructions on how to review your proof when it is ready. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few days to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Razieh Sheikhpour Academic Editor PLOS ONE |
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