Peer Review History

Original SubmissionJanuary 14, 2024
Decision Letter - Nafiu Bala Sanda, Editor

PONE-D-24-01103Sprayable RNAi for silencing of important genes to manage red palm weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae)PLOS ONE

Dear Dr. Naqqash,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by May 23 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file.

Please include the following items when submitting your revised manuscript:

  • A rebuttal letter that responds to each point raised by the academic editor and reviewer(s). You should upload this letter as a separate file labeled 'Response to Reviewers'.
  • A marked-up copy of your manuscript that highlights changes made to the original version. You should upload this as a separate file labeled 'Revised Manuscript with Track Changes'.
  • An unmarked version of your revised paper without tracked changes. You should upload this as a separate file labeled 'Manuscript'.

If you would like to make changes to your financial disclosure, please include your updated statement in your cover letter. Guidelines for resubmitting your figure files are available below the reviewer comments at the end of this letter.

If applicable, we recommend that you deposit your laboratory protocols in protocols.io to enhance the reproducibility of your results. Protocols.io assigns your protocol its own identifier (DOI) so that it can be cited independently in the future. For instructions see: https://journals.plos.org/plosone/s/submission-guidelines#loc-laboratory-protocols. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols.

We look forward to receiving your revised manuscript.

Kind regards,

Nafiu Bala Sanda, PhD

Academic Editor

PLOS ONE

Journal Requirements:

1. When submitting your revision, we need you to address these additional requirements.

Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at 

https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 

https://journals.plos.org/plosone/s/file?id=ba62/PLOSOne_formatting_sample_title_authors_affiliations.pdf

2. Thank you for stating in your Funding Statement: 

This project was financially supported King Abdulaziz City for Science and Technology (KACST), Saudi Arabia through the Project No. 11BIO1803-06

Please provide an amended statement that declares all the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now.  Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. 

Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf.

3. When completing the data availability statement of the submission form, you indicated that you will make your data available on acceptance. We strongly recommend all authors decide on a data sharing plan before acceptance, as the process can be lengthy and hold up publication timelines. Please note that, though access restrictions are acceptable now, your entire data will need to be made freely accessible if your manuscript is accepted for publication. This policy applies to all data except where public deposition would breach compliance with the protocol approved by your research ethics board. If you are unable to adhere to our open data policy, please kindly revise your statement to explain your reasoning and we will seek the editor's input on an exemption. Please be assured that, once you have provided your new statement, the assessment of your exemption will not hold up the peer review process.

4. We note that your Data Availability Statement is currently as follows: All relevant data are within the manuscript and its Supporting Information files

Please confirm at this time whether or not your submission contains all raw data required to replicate the results of your study. Authors must share the “minimal data set” for their submission. PLOS defines the minimal data set to consist of the data required to replicate all study findings reported in the article, as well as related metadata and methods (https://journals.plos.org/plosone/s/data-availability#loc-minimal-data-set-definition).

For example, authors should submit the following data:

- The values behind the means, standard deviations and other measures reported;

- The values used to build graphs;

- The points extracted from images for analysis.

Authors do not need to submit their entire data set if only a portion of the data was used in the reported study.

If your submission does not contain these data, please either upload them as Supporting Information files or deposit them to a stable, public repository and provide us with the relevant URLs, DOIs, or accession numbers. For a list of recommended repositories, please see https://journals.plos.org/plosone/s/recommended-repositories.

If there are ethical or legal restrictions on sharing a de-identified data set, please explain them in detail (e.g., data contain potentially sensitive information, data are owned by a third-party organization, etc.) and who has imposed them (e.g., an ethics committee). Please also provide contact information for a data access committee, ethics committee, or other institutional body to which data requests may be sent. If data are owned by a third party, please indicate how others may request data access.

5. Please include your tables as part of your main manuscript and remove the individual files. Please note that supplementary tables (should remain/ be uploaded) as separate "supporting information" files.

Additional Editor Comments:

There are conflicting interest among the reviewers, please, take your valuable time to clearly responds to each comments as appropriate.

[Note: HTML markup is below. Please do not edit.]

Reviewers' comments:

Reviewer's Responses to Questions

Comments to the Author

1. Is the manuscript technically sound, and do the data support the conclusions?

The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: No

Reviewer #4: Partly

**********

2. Has the statistical analysis been performed appropriately and rigorously?

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: No

**********

3. Have the authors made all data underlying the findings in their manuscript fully available?

The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified.

Reviewer #1: Yes

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

4. Is the manuscript presented in an intelligible fashion and written in standard English?

PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here.

Reviewer #1: No

Reviewer #2: Yes

Reviewer #3: Yes

Reviewer #4: Yes

**********

5. Review Comments to the Author

Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters)

Reviewer #1: The manuscript presents new information relevant to the management of red palm weevil. However, it was difficult to interpret the text occasionally. The reviewer has recommendations at the following pages and figures.

Page 20 “Pupal duration recorded was lower in SCP and actin treatment were 12.20±0.20 and 12.00±0.32 days, while it was significantly higher in the control (14.00±0.32).” This sentence is difficult to understand and needs to be rewritten.

Page 23 Please define the meaning of “reduction in transcript levels” Do you mean transcription rate? And what are “pronounced metamorphosis effects”? Are these measured by differences in mortality rates? What is an “efficient effect” This entire section should be rewritten more clearly.

Figure 1 “vector as were named as” possibly should be “vector and were designated as”

Figures 3 -5 What do the letters a and b indicate?

Figure 4 what does (A) and (B) indicate that is not also designated by the color difference?

Table 1 seems to be missing.

Reviewer #2: RNA interference (RNAi) is a powerful tool for knocking down gene function in pest control. In the present study, the authors targeted to silence of several important genes in red palm weevil and obtained promising results. The topic covered in the article is interesting and falls within the scope of the Journal.

The manuscript is well-written and organized.

The experimental design looks good. The study looks promising and adequately replicated

The findings are robust and statistically ok.

Please find the attached manuscript with my comments. I provided several suggestions.

Reviewer #3: I noticed that the article entitled Sprayable RNAi for silencing of important genes to manage red palm weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae) was submitted. However, the author's experimental content limitation, which did not fully resolve my concerns. Furthermore, through further reading, I have developed some new insights. Therefore, I recommend rejection for publication in its current form due to the following major concerns:

1.Why choose 3 rd and 5 th instar ? This issue has not been clearly analyzed in either the Materials and Methods or the results sections.

2.The manuscript presents some initial attempts to explore the research topic, which is commendable. However, these efforts appear to be in the early stages of exploration and lack depth. The experimental contents are too lilmited, only survival of instar, weight change in instar, pupal duration and adult emergence. The experiment should be added, such as the effect of egg hatchability, adult mating ability and offspring.

Reviewer #4: The paper titled "Sprayable RNAi for silencing of important genes to manage red palm weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae)" addresses a significant issue related to the sustainable control of the Red Palm Weevil. This insect pest poses a considerable economic threat due to the damage it causes to decorative palms and, more critically, the threat it poses to date palms, particularly in countries where the economy is heavily dependent on them. The authors propose the utilization of dsRNAi in the diet of RPW larvae, which holds promise as a future biopesticide. Several recent studies have also explored similar approaches involving RNAi targeting selected genes such as the olfactory co-receptor, cuticle proteins, and reproductive-related genes. Encouraging and advancing research in this direction will accelerate the development of an effective biopesticide capable of effectively managing the pest population. However, reviewing the results was somewhat challenging as I couldn't locate any of the four tables mentioned in the paper, unless I overlooked them. Before receiving clarification on the tables, I would like to express some comments:

-In section 3.2, regarding the effects of dsRNAs on survival, I would appreciate more details about this experiment. I would prefer a standard analysis such as the Kaplan-Meier method rather than comparing means, as I find it insufficiently informative.

-Regarding the weight gain becarefull to the Y-axis of the Figure 3, please try to harmonize the police and the linear scale. There are 3-7 instar larvea in the RPW, the larval stage can last until 2 months , so maybe if you made a follow-up of more than 6 days the results will be more pronounced.

-Are the selected genes capable of giving direct effects on the weight gain ? I think that they are more involved in some physiological and morphological traits that will not necessarily be reflected by the larvae weight.

- The figures for pupal duration require revision, as there is a title "Treatment" that should be removed. Upon reviewing the figures, it is apparent that pupal duration is reduced. Does this imply that emergence occurred earlier? If so, it suggests that the dsRNA treatment shortened pupal duration, resulting in the emergence of adults in a shorter time frame !! However, the data on emergence indicate a significant and promising effect across almost all genes.

A figure illustrating the relative expression of the genes is absent. Such a figure is crucial for comprehending the underexpression of the genes. Additionally, statistical analysis for this section is lacking. While I recognize that this section primarily aims to confirm the reduction of gene expression, it should be presented in a more comprehensive manner to adequately convey the findings.

Please ensure that the acknowledgment section is corrected and that any typos present in the manuscript are addressed.

**********

6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files.

If you choose “no”, your identity will remain anonymous but your review may still be made public.

Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy.

Reviewer #1: No

Reviewer #2: No

Reviewer #3: No

Reviewer #4: No

**********

[NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.]

While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step.

Attachments
Attachment
Submitted filename: PONE-D-24-01103_R1.pdf
Revision 1

We are grateful to the reviewers for their thorough evaluation of our manuscript titled "Sprayable RNAi for silencing of important genes to manage red palm weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae)." We have carefully considered each comment and have made significant revisions to address the reviewers' concerns. Below, we provide a detailed response to each point raised by the reviewers, indicating how we have modified the manuscript accordingly.

Reviewer #1:

1. Page 20: Sentence Clarity

- Comment: "Pupal duration recorded was lower in SCP and actin treatment were 12.20±0.20 and 12.00±0.32 days, while it was significantly higher in the control (14.00±0.32)."

- Response: We have rewritten this sentence for clarity. It now reads: " The pupal duration was lower in the SCP and actin treatments (12.20±0.20 and 12.00±0.32 days, respectively), whereas it was significantly higher in the control (14.00±0.32)."

2. Page 23: Clarifications Needed

- Comment: Define “reduction in transcript levels,” “pronounced metamorphosis effects,” and “efficient effect.”

- Response: We have clarified these terms. “Reduction in transcript levels” now specifies “expression levels of the targeted gene.” “Pronounced metamorphosis effects” are defined by observable differences in developmental stages, particularly changes in mortality rates and developmental timing. Terms are revised as “body weight gain, and different preadult length, weight, and survival rates.”

3. Figure 1: Labeling Issue

- Comment: "vector as were named as" should be "vector and were designated as"

- Response: This correction has been made in the manuscript.

4. Figures 3-5: Clarification of Letters

- Comment: Explanation needed for letters 'a' and 'b.'

- Response: We have added a legend explaining that the letters 'a' and 'b' indicate statistically significant differences between groups, with the same letter denoting no significant difference.

5. Figure 4: Clarification of (A) and (B)**

- Comment: Clarify what (A) and (B) indicate.

- Response: The legend now specifies that (A) and (B) represent different experimental conditions or treatments.

6. Table 1: Missing Table

- Comment: Table 1 is missing.

- Response: We apologize for this oversight. Table 1 has been included in the revised manuscript.

Reviewer #2:

We thank Reviewer #2 for their positive feedback and constructive suggestions. We have incorporated their specific comments from the attached manuscript to improve clarity and depth.

Reviewer #3:

1. Selection of 3rd and 5th Instar

- Comment: Justification needed for choosing 3rd and 5th instar.

- Response: We have added a detailed explanation in the Materials and Methods section, justifying the selection based on previous studies showing these stages are critical for assessing RNAi efficacy due to their active feeding and development phases.

2. Depth of Experimental Content

- Comment: Limited experimental content.

- Response: Modified methodology of earlier studies conducted by Naqqash et al. (2020) was used for the experiments (Naqqash, M.N., Gökçe, A., Aksoy, E. and Bakhsh, A., 2020. Downregulation of imidacloprid resistant genes alters the biological parameters in Colorado potato beetle, Leptinotarsa decemlineata Say (chrysomelidae: Coleoptera). Chemosphere, 240, p.124857).

Reviewer #4:

1. Details on Survival Analysis

- Comment: Prefer Kaplan-Meier analysis for survival data.

- Response: We have conducted a Kaplan-Meier survival analysis and included these results in the revised manuscript.

2. Figure 3: Y-axis and Scale Harmonization

- Comment: Harmonize Y-axis and scale.

- Response: The Y-axis and scale in Figure 3 have been harmonized for consistency. However, for follow up time we have followed already available literature which has suggested follow up time of 3-6 days.

4. Effect of Selected Genes

- Comment: Clarify the direct effects of selected genes on weight gain.

- Response: We have discussed the roles of the targeted genes in physiological and morphological traits, explaining their indirect effects on weight gain.

5. Figure for Pupal Duration and Gene Expression

- Comment: Revision of figures and inclusion of gene expression data.

- Response: We have revised the figures for clarity and included a new figure illustrating the relative expression levels of the targeted genes. Statistical analyses for these data have also been added.

We believe that these revisions have significantly improved the manuscript. We are grateful for the reviewers' insights, which have helped us enhance the quality and clarity of our work. We look forward to the possibility of our revised manuscript being considered for publication.

Attachments
Attachment
Submitted filename: Response to reviewers.docx
Decision Letter - Nafiu Bala Sanda, Editor

Sprayable RNAi for silencing of important genes to manage red palm weevil, Rhynchophorus ferrugineus (Coleoptera: Curculionidae)

PONE-D-24-01103R1

Dear Dr. Muhammad Naeem Sattar,

We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements.

Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication.

An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org.

If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

Kind regards,

Nafiu Bala Sanda, PhD

Academic Editor

PLOS ONE

Additional Editor Comments (optional):

The manuscript can thus be accepted for publications in PLOS ONE Journal.

Reviewers' comments:

Formally Accepted
Acceptance Letter - Nafiu Bala Sanda, Editor

PONE-D-24-01103R1

PLOS ONE

Dear Dr. Sattar,

I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team.

At this stage, our production department will prepare your paper for publication. This includes ensuring the following:

* All references, tables, and figures are properly cited

* All relevant supporting information is included in the manuscript submission,

* There are no issues that prevent the paper from being properly typeset

If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps.

Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org.

If we can help with anything else, please email us at customercare@plos.org.

Thank you for submitting your work to PLOS ONE and supporting open access.

Kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. Nafiu Bala Sanda

Academic Editor

PLOS ONE

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .