Peer Review History
| Original SubmissionFebruary 19, 2024 |
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PONE-D-24-04889Moderate-intensity physical activity reduces the role of serum PFAS on COPD: A cross-sectional analysis with NHANES dataPLOS ONE Dear Dr. Guo, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. The manuscript has been evaluated by two reviewers, and their comments are available below. Both reviewers indicate that work should be done to improve the reporting of this study. Specifically, clarification around the statistical methods used has been requested and revisions to improve the presentation of the conclusions. As an observational study, reviewers have also suggested using the STROBE checklist to improve the overall reporting of the study. Please submit your revised manuscript by Jun 03 2024 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Thank you for stating the following in your Competing Interests section: "Manyi Pan, Yuxin Zou, Gang Wei, Caoxu Zhang, Kai Zhang, Huaqi Guo and Weining Xiong declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper." Please complete your Competing Interests on the online submission form to state any Competing Interests. If you have no competing interests, please state "The authors have declared that no competing interests exist.", as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now This information should be included in your cover letter; we will change the online submission form on your behalf. 4. We note that you have included the phrase “data not shown” in your manuscript. Unfortunately, this does not meet our data sharing requirements. PLOS does not permit references to inaccessible data. We require that authors provide all relevant data within the paper, Supporting Information files, or in an acceptable, public repository. Please add a citation to support this phrase or upload the data that corresponds with these findings to a stable repository (such as Figshare or Dryad) and provide and URLs, DOIs, or accession numbers that may be used to access these data. Or, if the data are not a core part of the research being presented in your study, we ask that you remove the phrase that refers to these data. Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: I Don't Know ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: No ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: GENERAL COMMENTS This is a study exploring potential associations between perfluoroalkyl substances (PFAS) exposure and the development of chronic obstructive pulmonary disease (COPD). Additionally, authors aimed to evaluate whether physical activity (PA) may protect individuals from developing COPD-related exposure to PFAS. They have used the 2013-2018 National Health and Nutrition Examination Survey (NHANES) data to perform analyses. The rationale for conducting the research has merits even if data and analysis are not robust for concluding on any cause-effect relationship. I miss, however, goodness of fit measures of the models they present. SPECIFIC COMMENTS Abstract Line 28: This part of the sentence sound strange “…that have been studied to demonstrate their possible association with reduced lung function.”. Please improve. Also, begin the next sentence with a capital P (Physical activity). Line 40: I find your conclusion overly cautious. I suggest something like: “PFAS exposure may increase the risk of developing COPD, but regular moderate-intensity physical activity can protect individuals from evolving to the disease. However, longitudinal studies are needed to support these preliminary findings.” Introduction Line 64: I suggest you use a more modern definition of PA, such as that by Piggin, J. (2020). What is physical activity? A holistic definition for teachers, researchers and policy makers. Frontiers in Sports and Active Living, 2, 72. https://www.frontiersin. org/articles/10.3389/fspor.2020.00072 Line 69: The rationale in the previous paragraphs direct the reader that PFAS and physical activity exposures can individually affect COPD in opposing directions, not just different directions. Materials and Methods Line 92: Please, add the specific link so that readers can access it easily. Line 100: I suggest you delete “of sport”. Line 106: I’m not aware that this article (reference #26) discusses the conversion of MET-min/week to 150min/week of moderate intensity activity. Can you tell in which page, please? Lines 112–115: Can you provide the rationale and the supporting literature? Line 121: “Therefore, ln-transformation was performed in the regression analysis to improve the normality”. It doesn’t matter the normality of the independent variable for regression analysis. What matters is the normality of the residuals or errors but in linear regression. More importantly, have you tested the assumptions for trusting the results of the logistic regression: linearity, independence of errors and multicollinearity? Please, report. Line 126: Is “multinomial” missing before “logistic regression”? Or PA was an independent variable? Results Lines 133–134: I believe PA=0, PA=1 and PA=2 are probably the codes used as dependent variables in multinomial logistic regression models. I think they should be deleted. I think however that you should report more clearly in the statistical analysis section the dependent variable categories. You just state “various types of PA” on line 126. Table 1. Please add the units of measurement in income and body mass index. Also, be consistent with the decimals. Sometimes, you don’t have any, present 1 or 2 decimals. You have not prepared readers for sections 3.3. and 3.4, and Tables 2, 3 and 4 in the statistical analysis section. Please report there the methods and analyses used. I’m not following you in section 3.4. Have you conducted separated analysis for each subgroup (just odds ratio) or have you conducted multivariate logistic regression? Reviewer #2: This article presents interesting assumptions about COPD and physical activity. The work is relevant and with an adequate methodology, but some inaccurate elements need improvement. I have some major and minor comments listed below. Major comments #1 Revise English with a mother tongue reviewer. #2 The hypothesis (lines 62 and 63) is poorly formulated. The relationship between PFAS and COPD was assessed, not the impact. #3 The definition of physical activity is incomplete; I recommend an umbrella reference such as Caspersen et al. 1985. Additionally, reference 20 refers to a type of exercise and not physical activity. Several studies have proven the effectiveness of physical activity in COPD, that includes any bodily movement requiring energy expenditure. #4 As an observational study, a guideline for reporting observational studies, such as the STOBE statement https://www.strobe-statement.org/, should be used, and authors should confirm through the checklist that all items are reported. #5 The discussion is generally written with hasty conclusions and a lot of "certainty" instead of suggesting these relationships between PA, PFAS and COPD, as this study is observational. Minor comments #1 Revise acronyms throughout the manuscript. For example, the acronym for physical activity is defined in line 64 but is not used throughout the manuscript. #2 Authors mention where they obtained the data, but URLs should be available (section 2.1). #3 Typo in Figure 1: "analyse" instead of "analysis". #4 In line 98, the "NHANES Physical Activity Questionnaire (PAQ)" is not described (type of question/ answer, scoring...). #5 Line 112 - confound factors are mentioned, but not how they were obtained, whether through literature or what the reasoning was. Additionally, confirm that all variables are reported coherently in sections 2.4 and 2.5 (models 1 and 2) and the results table, and describe all variables in terms of their meaning (for example, the variable "Cycle" is not clear to what it refers to). #6 Lines 124 - 125 - need to explain the rationale behind separating the confounding variables in the two models - statistical? Evidence-based? #7 Table 1 - No indentation on the categories of physical activity. #8 Lines 203-204 - Reformulate the sentence by removing "cessation". ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Nuno Morais Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. Then, login and navigate to the UPLOAD tab, where you will find detailed instructions on how to use the tool. If you encounter any issues or have any questions when using PACE, please email PLOS at figures@plos.org. Please note that Supporting Information files do not need this step. |
| Revision 1 |
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Moderate-intensity physical activity reduces the role of serum PFAS on COPD: A cross-sectional analysis with NHANES data PONE-D-24-04889R1 Dear Dr. Guo, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice will be generated when your article is formally accepted. Please note, if your institution has a publishing partnership with PLOS and your article meets the relevant criteria, all or part of your publication costs will be covered. Please make sure your user information is up-to-date by logging into Editorial Manager at Editorial Manager® and clicking the ‘Update My Information' link at the top of the page. If you have any questions relating to publication charges, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Vanessa Carels, PhD Staff Editor PLOS ONE Additional Editor Comments (optional): Please attend to Reviewer #2's minor comment regarding some missing acronyms throughout the manuscript prior to final submission, thank you! Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #1: All comments have been addressed Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: (No Response) ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: (No Response) ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: (No Response) ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: (No Response) ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: (No Response) Reviewer #2: The comments have been addressed and the paper has improved significantly, being acceptable for publication. I would just leave a small suggestion to repeat the search for the words "physical activity" throughout the article, as there are still some acronyms missing. Congratulations on your work and dedication! ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: Nuno Morais Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-24-04889R1 PLOS ONE Dear Dr. Guo, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Avanti Dey Staff Editor PLOS ONE |
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