Peer Review History
| Original SubmissionJune 23, 2023 |
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PONE-D-23-19279Burden of non-serious infections during biological use for rheumatoid arthritisPLOS ONE Dear Dr. Bergmans, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Your manuscript has been evaluated by two reviewers, and their comments are appended below. Both reviewers have commented on the study design and on the overall detail and clarity of communication in your manuscript. Please ensure you address each of the reviewers' comments when revising your manuscript. Please submit your revised manuscript by Dec 11 2023 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Kind regards, Hugh Cowley Staff Editor PLOS ONE Journal Requirements: When submitting your revision, we need you to address these additional requirements. 1. Please ensure that your manuscript meets PLOS ONE's style requirements, including those for file naming. The PLOS ONE style templates can be found at https://journals.plos.org/plosone/s/file?id=wjVg/PLOSOne_formatting_sample_main_body.pdf and 2. Thank you for stating in your Funding Statement: “The Dutch Biologic Monitor work was supported by the Netherlands Organisation for Health Research and Development (ZonMw) [grant number 848050005]. No funding was received for this study.” Please provide an amended statement that declares *all* the funding or sources of support (whether external or internal to your organization) received during this study, as detailed online in our guide for authors at http://journals.plos.org/plosone/s/submit-now. Please also include the statement “There was no additional external funding received for this study.” in your updated Funding Statement. Please include your amended Funding Statement within your cover letter. We will change the online submission form on your behalf. 3. We note that the grant information you provided in the ‘Funding Information’ and ‘Financial Disclosure’ sections do not match. When you resubmit, please ensure that you provide the correct grant numbers for the awards you received for your study in the ‘Funding Information’ section. [Note: HTML markup is below. Please do not edit.] Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Partly Reviewer #2: Partly ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: I Don't Know Reviewer #2: N/A ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: No Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: No Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: I appreciate the underlying intent of the authors in their approach, although I have reservations regarding the implementation of the bi-monthly survey. This method seems to have potentially resulted in an inaccurate representation of the actual duration of nonserious infections. This concern is particularly pronounced in cases of upper respiratory tract infections and skin and soft tissue infections, as explicitly mentioned in the manuscript. As a general note I found the terminology of adverse drug reaction misleading when talking about nonserious infections. More detail is needed in the methodology section regarding the process of stratifying each patient episode. The authors have separated infections into definite and probable, however there is no example of what would classify a definite infection. For example the patient stated they went to their GP and got a herpes swab or got a rapid antigen covid test and this was positive. An explanation of how the authors put episodes into each category would have been appreciated to understand how the data was sorted. Some of the language used in the manuscript is very confusing. There was also a lot of interpretation in the results section. For example "Remarkably, only 41.8% of skin- and soft tissue infections were followed by contact by an HCP, even though their occurrence was relatively high at a total of 79 ADRs, and such infections would normally require medical intervention." I feel like this interpretation belongs in the discussion. The authors quote the number of infection per 100 patient years. It would be nice to reference general population figures for infections as well - was this above the rate seen in the general population? The authors state accurately in the conclusion that the study design leads to significant recall bias for patients. The impact on patients is I think worth looking into more and whether or not patients withheld medications because of it would have been interesting to divulge into. Reviewer #2: Comments and observations to the authors on the Article “Burden of non-serious infections during biological use for rheumatoid arthritis GENERAL COMMENTS: I revised the paper based on suggested recommendations. I want to extend my appreciation for taking the time and effort necessary to satisfy my comments. I found a merit in your paper, otherwise I identified some concerns. I think you bring up some important issues that will spark considerable debate, both in terms of what you have actually found and in terms of the medical implications. My comments are mainly aimed at tightening up the logic and the clarity of what you have communicated and tested. The article is well written and logically structured. The originality is the theme of non-serious infections that have not been given the same attention in the literature as the serious infections had. The raise of this theme is astute and it serve very well to highlight creative and different ways of thinking about the safety of these drugs. My first claim is to accept the article with minor revisions, but I also suggest to the authors to write a more convincing reasons in support of their methodology. SPECIFIC COMMENTS Comment_ introduction: starting with the introduction, and wherever you say “the biologicals”, please say what you actually found, not just that there are “the biologicals”. Rheumatoid arthritis is a disease characterised by inflammation of synovial joints. Please add more detailed information about this disease (epidemiology and etc….). One of the most significant land in the RA therapeutic landscape has occurred with the introduction of biological disease modifying anti-rheumatic drugs. Please add epidemiology data on RA and biologicals drugs. There are many classes of biological drugs currently available, each with a different molecular target and differences in their efficacy and safety profile. Please describe the real-world use of your biological drugs and how they fit into your analysis. Line 67: please add some more references to support your statement: “unlike serious infections, non-serious infections have not been given the same attention in the scientific literature”. Please add the reason why the literature did not pose so much attention to this issue: perhaps, because it has been greatly reassuring to the rheumatology community that they have been found to have an acceptable benefit-to-risk profile and are well tolerated in the long term? Line 73: “Prior research shows that such infections have a high socioeconomic burden”: this is a crucial point in your paper, since for the clinician the most important ADRs are usually the most serious ones, but for the patient even an itching (non-serious reaction) that has been going on for years can be very disabling and annoying. A good quality of life is very important for the patient. Line 79 and line 85: “patient tend”: in your paper it is crucial the patient view. Please stress this point, because the patient reporting is very, very important and it raised some different aspects in comparison to the physician reporting. Line 155: I do not really understand what you mean. Why did you not report/use the causality assessment that is usually used in pharmacovigilance (I mean WHO-UMC) system, Naranjo algorithm or other updated Logistic method)? I think that a causality assessment evaluation would be important. I mean it would be important to follow these steps: “All non-serious ADR reports, not related to vaccines and with a "definite", "probable" or "possible" causality assessment, inserted into the database (period- time) were analyzed”. Please also add the criteria of non -seriousness events. Otherwise, if you would like to follow these “assigning infection probability and recoding by medical professionals” please describe better your method and especially explain you have followed a standard method recognized by the scientific literature. Line 166: “Because MedDRA coding showed discrepancies between the assigned coding and the expert opinion of the infectious disease professionals, ADRs deemed definite, probable or possible infections were MedDRA-recoded by the authors when needed”: I do not really understand your methods. Did you change the coding assigned/identified by the patient? Line 214: TNF-alpha inhibitors were the most frequently used biologicals (495 patients, 215 84.5%. And what about the others? And which TNF-inhibitors did you include? Can you also provide a list of PT terms related to each drug, please? Line 342: Because it was sometimes uncertain to what extent reported ADRs were infections, each ADR was rated by four medical professionals specialized in infectious disease or adverse event registration as definite, probable or possible infection or as non-infectious ADR. This is a crucial point in your paper and this is the main point I do not really understand. I mean when an ADR is reported by a healthcare professional/citizen it is then coded via MedDRA. If the ADR is not clear, the health operators/patient is called and explanations are asked. Then a causality assessment (rating with definite, probable, etc…) is assigned to each drug-ADR pair and a severity level to each event. Which method did you use for you analysis? Just other two comments: among the limitations it would be important to also stress those of spontaneous reporting system and among the discussion to include the patient reporting system. I do not make other important requests to the other parts of the article, because, in my opinion, the line 342 is a fundamental point. Line 423: “To the best of our knowledge, this is the first study giving an overview….” In the literature some articles describing also these non- serious ADRs. I think it would be good to cite these articles and to compare your results with their results. General comments to the Editor: Thank you for giving us me the opportunity to review this article. I raised some comments. The crucial point of this article is the methodology. Thank you ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: No Reviewer #2: No ********** [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. Please log into your account, locate the manuscript record, and check for the action link "View Attachments". If this link does not appear, there are no attachment files.] While revising your submission, please upload your figure files to the Preflight Analysis and Conversion Engine (PACE) digital diagnostic tool, https://pacev2.apexcovantage.com/. PACE helps ensure that figures meet PLOS requirements. To use PACE, you must first register as a user. Registration is free. 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| Revision 1 |
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Burden of non-serious infections during biological use for rheumatoid arthritis PONE-D-23-19279R1 Dear Dr. Bergmans, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Sreeram V. Ramagopalan Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: Reviewer's Responses to Questions Comments to the Author 1. If the authors have adequately addressed your comments raised in a previous round of review and you feel that this manuscript is now acceptable for publication, you may indicate that here to bypass the “Comments to the Author” section, enter your conflict of interest statement in the “Confidential to Editor” section, and submit your "Accept" recommendation. Reviewer #2: All comments have been addressed ********** 2. Is the manuscript technically sound, and do the data support the conclusions? The manuscript must describe a technically sound piece of scientific research with data that supports the conclusions. Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #2: Yes ********** 3. Has the statistical analysis been performed appropriately and rigorously? Reviewer #2: I Don't Know ********** 4. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #2: Yes ********** 5. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #2: Yes ********** 6. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #2: (No Response) ********** 7. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #2: No ********** |
| Formally Accepted |
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PONE-D-23-19279R1 PLOS ONE Dear Dr. Bergmans, I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now being handed over to our production team. At this stage, our production department will prepare your paper for publication. This includes ensuring the following: * All references, tables, and figures are properly cited * All relevant supporting information is included in the manuscript submission, * There are no issues that prevent the paper from being properly typeset If revisions are needed, the production department will contact you directly to resolve them. If no revisions are needed, you will receive an email when the publication date has been set. At this time, we do not offer pre-publication proofs to authors during production of the accepted work. Please keep in mind that we are working through a large volume of accepted articles, so please give us a few weeks to review your paper and let you know the next and final steps. Lastly, if your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. If we can help with anything else, please email us at customercare@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Sreeram V. Ramagopalan Academic Editor PLOS ONE |
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